Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3418 114 3e-20 seq1882 111 4e-19 seq2272 93.3 1e-13 >seq3418 Length=21158 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || |||||| | || ||||| || ||| Sbjct 205 CAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTCAGAC 146 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||| || || || || ||| || || || Sbjct 145 ACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAGCAG 86 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || |||||||| || | ||||||||| | Sbjct 85 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAACATT 26 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||| |||||| Sbjct 25 CAGAAAGAGTCTACCCTTCAC 5 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| || || |||||| | || ||||| || ||| Sbjct 433 CAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCCGTCAGAC 374 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||| || || || || ||| || || || Sbjct 373 ACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAGCAG 314 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| |||| || |||||||| || | ||||||||| | Sbjct 313 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAACATT 254 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||| |||||| Sbjct 253 CAGAAAGAGTCTACCCTTCAC 233 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 |||||| |||||||||||||| | || || |||| || |||||||| || |||||||| Sbjct 5 GTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGCTG 64 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||| ||||||||||| || || || ||| Sbjct 65 CTTGCCGGCGAAGATCAGACGCTGCTGA 92 >seq1882 Length=48858 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || |||||| | || ||||| || ||| Sbjct 48704 CAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTCAGAC 48645 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||| || || || || ||| || || || Sbjct 48644 ACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAGCAG 48585 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| |||| || |||||||| || | ||||||||| | Sbjct 48584 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAACATT 48525 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||| |||||| Sbjct 48524 CAGAAAGAGTCTACCCTTCAC 48504 Score = 96.9 bits (106), Expect = 8e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||||||||| || || || || ||| || || || | || ||||||||||| || Sbjct 48852 AAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAGCAGCGTCTGATCTTCGCCGGCAA 48793 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||| |||| ||||||||||| || | ||||||||| | |||||||||||||| ||||| Sbjct 48792 GCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAACATTCAGAAAGAGTCTACCCTTCA 48733 Query 206373 C 206373 | Sbjct 48732 C 48732 Score = 91.5 bits (100), Expect = 3e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 |||||| |||||||||||||| | || || |||| || ||||||||||| |||||||| Sbjct 48732 GTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCCTCCAGCTG 48791 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||| ||||||||||| || || || ||| Sbjct 48792 CTTGCCGGCGAAGATCAGACGCTGCTGA 48819 >seq2272 Length=181047 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||||||||| |||||| | || |||||| ||| ||||| ||||| Sbjct 120874 AAGACCCTTACAGGAAAAACCATCACTCTCGACGTGGAACCTTCCGACACCATCGAAAAT 120933 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || || || || ||| || || | ||||||||| Sbjct 120934 GTGAAGGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGATCAGCAGCGTCTTATCTTC 120993 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| | || || || |||||| | | ||||||||| | ||||| || Sbjct 120994 GCAGGAAAGCAACTTGATGACGGCAGGACTCTTTCGGATTACAACATTCAGAAGGAAAGC 121053 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 121054 ACCCTTCAC 121062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181764668313147