Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3418 89.7 5e-13 seq1882 86.0 6e-12 >seq3418 Length=21158 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| ||||| || | | | |||||||| ||||||||||| || || || | Sbjct 218 CAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCT 277 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 || || ||||| || || | |||| |||||||| ||||| ||||| ||||| || Sbjct 278 TCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTC 337 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||| ||| |||| | || | || || | ||||||||| |||| || Sbjct 338 CTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGT 397 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || || ||||| || | || |||||||| Sbjct 398 GATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCAT 436 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131916 CCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGA 131975 |||| || | | | |||||||| ||||||||||| || || || | || || | Sbjct 1 CCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCA 60 Query 131976 GCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAA 132035 |||| || |||| |||| |||||||| ||||| ||||| ||||| || || || || Sbjct 61 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAA 120 Query 132036 TTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTAC 132095 | ||| |||| | || | || || | ||||||||| |||| || | || || | Sbjct 121 TCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCC 180 Query 132096 CAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || || || | || ||||||||| Sbjct 181 CCGTGAGGGTCTTCACAAAGATCTGCATG 209 >seq1882 Length=48858 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| ||||| || | | | |||||||| ||||||||||| || || || | Sbjct 48489 CAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCT 48548 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 || || ||||| || || | |||| |||||||| ||||| ||||| ||||| || Sbjct 48549 TCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTC 48608 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||| ||| |||| | || | || || | ||||||||| |||| || Sbjct 48609 CTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGT 48668 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || || || || || || | || ||||||||| Sbjct 48669 GATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCATG 48708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476589115028520