Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq3363 104 2e-17 seq261 102 8e-17 seq568 100 3e-16 seq2515 96.9 3e-15 seq751 96.9 3e-15 seq633 96.9 3e-15 seq479 96.9 3e-15 seq139 96.9 3e-15 >seq3363 Length=23469 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 9382 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 9323 Query 39838 CCCGGTGCCCGTATTTC 39854 ||||||||||||||||| Sbjct 9322 CCCGGTGCCCGTATTTC 9306 >seq261 Length=59024 Score = 102 bits (112), Expect = 8e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 14406 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 14347 Query 39838 CCCGGTGCCCGTATTT 39853 |||||||||||||||| Sbjct 14346 CCCGGTGCCCGTATTT 14331 >seq568 Length=158620 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 55931 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 55872 Query 39838 CCCGGTGCCCGTATT 39852 ||||||||||||||| Sbjct 55871 CCCGGTGCCCGTATT 55857 >seq2515 Length=1466 Score = 96.9 bits (106), Expect = 3e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 195 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 136 Query 39838 CCCGGTGCCCGTATTT 39853 ||||||||||||| || Sbjct 135 CCCGGTGCCCGTACTT 120 >seq751 Length=11150 Score = 96.9 bits (106), Expect = 3e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 612 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 671 Query 39838 CCCGGTGCCCGTATTT 39853 ||||||||||||| || Sbjct 672 CCCGGTGCCCGTACTT 687 >seq633 Length=21036 Score = 96.9 bits (106), Expect = 3e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 3362 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 3421 Query 39838 CCCGGTGCCCGTATTT 39853 ||||||||||||| || Sbjct 3422 CCCGGTGCCCGTACTT 3437 >seq479 Length=267577 Score = 96.9 bits (106), Expect = 3e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 73779 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 73720 Query 39838 CCCGGTGCCCGTATTT 39853 ||||||||||||| || Sbjct 73719 CCCGGTGCCCGTACTT 73704 >seq139 Length=6361 Score = 96.9 bits (106), Expect = 3e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 779 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 720 Query 39838 CCCGGTGCCCGTA 39850 ||||||||||||| Sbjct 719 CCCGGTGCCCGTA 707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466103200942080