Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1593 95.1 2e-13 >seq1593 Length=3875 Score = 95.1 bits (104), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| ||||||||||||||| ||||| |||| | || |||||| Sbjct 1466 ATCTTCAAGGTGCTGAAGCAGGTGCACCCCGAAACCGG-----CATCAGC-AAGAAGTCC 1519 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||| ||| || | ||| | |||| || | | || || || Sbjct 1520 ATGATGATCATGACCTCTTTAATTGGCGATACTTTCGATAAAATTGCTTCGGAAGCTGGA 1579 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| | |||||| | ||| | | | |||||||||||||| ||||| Sbjct 1580 AAGCTGTGCAAATACAACAAAAAAGATACGCTTTCCTCCCGCGAGATCCAGACGGCCGTC 1639 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | | | ||||||||| |||| ||||||||| ||||||||||||| Sbjct 1640 CGCCTGGTGCTTCCCGGCGAACTCGCCAAGCACGCCGTTTCCGAGGGCACCA 1691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177453653036534