Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq620 120 3e-22 >seq620 Length=258453 Score = 120 bits (132), Expect = 3e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTC 79439 || |||||||||||| || ||||||| ||| | ||| ||||| || ||||| ||||| Sbjct 180861 CTTCATGAAGAGGTCGGGAATCCACAAGGCGGGGAAAAGGTCTCGAGCTCGCATTTCCTC 180802 Query 79440 GTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAG 79499 | ||| ||||| || | || ||||| || | ||||| || ||||||||||||| Sbjct 180801 TTTGCCGTGGTTTTTGCGAATTTCCAGAAACTCAAAAATGTCTGCATGCCACGGCTCCAC 180742 Query 79500 ATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTT 79559 || | |||| ||||| ||||||||||| ||||||| |||||||| | || || Sbjct 180741 GTACACCGCGAGGCTCCCCTTCCGCTTGCCGCCCCCCTGGTCCACGTACCGCGACGCGTC 180682 Query 79560 GTTGAAAAC 79568 |||||| || Sbjct 180681 GTTGAACAC 180673 Score = 116 bits (128), Expect = 4e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 19436 GTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTC 19495 || |||||| || || | ||||||| |||||||||||||||| || ||||| || Sbjct 180673 GTGTTCAACGACGCGTCGCGGTACGTGGACCAGGGGGGCGGCAAGCGGAAGGGGAGCCTC 180732 Query 19496 GCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAAC 19555 || | ||| | ||||| ||||| || ||| | | || || || ||| | ||| ||| Sbjct 180733 GCGGTGTACGTGGAGCCGTGGCATGCAGACATTTTTGAGTTTCTGGAAATTCGCAAAAAC 180792 Query 19556 CAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTA 19615 || || | ||||| ||||| ||| ||||| ||| | |||||||||||||| ||||| Sbjct 180793 CACGGCAAAGAGGAAATGCGAGCTCGAGACCTTTTCCCCGCCTTGTGGATTCCCGACCTC 180852 Query 19616 TTCATGGAG 19624 |||||| || Sbjct 180853 TTCATGAAG 180861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548499382732080