Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq620 105 7e-18 seq1722 93.3 5e-14 >seq620 Length=258453 Score = 105 bits (116), Expect = 7e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 53513 GTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTC 53572 || |||||| || || | |||||||| ||||||| || || ||||| |||||| || Sbjct 180673 GTGTTCAACGACGCGTCGCGGTACGTGGACCAGGGGGGCGGCAAGCGGAAGGGGAGCCTC 180732 Query 53573 GCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAAT 53632 || | ||| | ||||||||||| || |||||| | |||||||| || | || || Sbjct 180733 GCGGTGTACGTGGAGCCGTGGCATGCAGACATTTTTGAGTTTCTGGAAATTCGCAAAAAC 180792 Query 53633 CAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTC 53692 || || | || || ||||| || ||||| || | || |||||||||| |||||| Sbjct 180793 CACGGCAAAGAGGAAATGCGAGCTCGAGACCTTTTCCCCGCCTTGTGGATTCCCGACCTC 180852 Query 53693 TTCATG 53698 |||||| Sbjct 180853 TTCATG 180858 >seq1722 Length=194924 Score = 93.3 bits (102), Expect = 5e-14 Identities = 196/290 (68%), Gaps = 2/290 (1%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCG-GGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 ||||||||||| || || || | |||||| || || ||| | || || || || || Sbjct 164028 GTGAAGATGTAGCGCGGTGC-AGACGCATCTTTCCCTCCTTCTTTCCTCGAGCCGAATTG 164086 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 |||| ||||| |||| || ||||||||| |||||| || ||| |||| | | Sbjct 164087 TCCAACAGGCTCAAGGAAATTCAGGTTGTTGCTGCCCACAAACCGCTGCGCCATGGTTAT 164146 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || || ||||| | ||| |||||||| || || |||| || || | ||| || Sbjct 164147 GATAGTTTGTTGCAGGGACTGTTCTCCGTGGTGGTAAGCACTCTGTTCGGCTACGTAACC 164206 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 | |||||| || ||||||| || | | || || ||||||| | || | | ||| Sbjct 164207 TGACAACTGAGCGACCTTCAATTCAGCCTTCGTATTTTTCTTGAAAACTGCAAACAGCAC 164266 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCT 152317 |||||||| |||| | || ||||| | ||||| || ||||||| Sbjct 164267 TTTGCGCTGCCCAACTTTCCAGCCATCCACAAGTTGAGGGATAGAACGCT 164316 Score = 93.3 bits (102), Expect = 5e-14 Identities = 167/242 (69%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 117356 CCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCC 117415 |||||||||||| ||||| | || |||||||||||| ||||||||| || ||| Sbjct 164079 CCGAATTGTCCAACAGGCTCAAGGAAATTCAGGTTGTTGCTGCCCACAAACCGCTGCGCC 164138 Query 117416 AAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCC 117475 | | | | || || ||| ||| | || || ||||| || || |||| || || Sbjct 164139 ATGGTTATGATAGTTTGTTGCAGGGACTGTTCTCCGTGGTGGTAAGCACTCTGTTCGGCT 164198 Query 117476 ACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCA 117535 ||||| || | || |||||| ||||||| || | | || || ||||||| ||| Sbjct 164199 ACGTAACCTGACAACTGAGCGACCTTCAATTCAGCCTTCGTATTTTTCTTGAAAACTGCA 164258 Query 117536 TAAATCACCTTGCGCTG----ACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACG 117591 | | ||| |||||||| |||| | ||| |||||| | | |||||||| ||||| Sbjct 164259 AACAGCACTTTGCGCTGCCCAACTT---TCCAG-CCATCCACAAGTTGAGGGATAGAACG 164314 Query 117592 CT 117593 || Sbjct 164315 CT 164316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547190643378600