Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3418 141 1e-28 seq1882 134 2e-26 seq2272 116 4e-21 seq71 86.0 7e-12 >seq3418 Length=21158 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| ||||| || ||||| || ||||| || || ||| | Sbjct 437 AATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCCGTC 378 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||||||| || ||||||||||||||||| |||||||| || || Sbjct 377 AGACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCA 318 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || ||||| ||||| || ||||| | | || || | || || || Sbjct 317 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAA 258 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || ||||| | || |||| || | ||||| Sbjct 257 CATTCAGAAAGAGTCTACCCTTCACTTGGTGCTGCGCCTGAGAGGTGG 210 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || ||||| || || ||| | Sbjct 208 ATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 149 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || ||||||||||||||||| |||||||| || ||| Sbjct 148 GACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 89 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||| | | || || | || || || Sbjct 88 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAAC 29 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || || || || || ||||| Sbjct 28 ATTCAGAAAGAGTCTACCCTTCA 6 >seq1882 Length=48858 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || ||||| || || ||| | Sbjct 48707 ATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 48648 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || ||||||||||||||||| |||||||| || ||| Sbjct 48647 GACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 48588 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||| | | || || | || || || Sbjct 48587 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAAC 48528 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || ||||| | || |||| || | ||||| Sbjct 48527 ATTCAGAAAGAGTCTACCCTTCACTTGGTGCTGCGCCTGAGAGGTGG 48481 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 27483 GAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGC 27542 |||||| || ||||||||||||||||| |||||||| || ||||||||||| || || || Sbjct 48858 GAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAGCAGCGTCTGATCTTCGC 48799 Query 27543 TGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCAC 27602 || ||||| || ||||||| | || || | || || || | || || || || || Sbjct 48798 CGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAACATTCAGAAAGAGTCTAC 48739 Query 27603 TCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| | || |||| || | ||||| Sbjct 48738 CCTTCACTTGGTGCTGCGCCTGAGAGGTGG 48709 >seq2272 Length=181047 Score = 116 bits (128), Expect = 4e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 27395 ATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGG 27454 || || ||| ||||| ||||| || ||||| ||||| || || || || ||||| || | Sbjct 120848 ATTTTTCTAAGATGCAGATCTTCGTGAAGACCCTTACAGGAAAAACCATCACTCTCGACG 120907 Query 27455 TTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTC 27514 | || | || | ||| | |||| ||||||| ||||| || ||||||||||| || | Sbjct 120908 TGGAACCTTCCGACACCATCGAAAATGTGAAGGCCAAAATCCAAGACAAGGAGGGCATCC 120967 Query 27515 CTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAG 27574 | || || ||||||||||| || || || || |||||||| || || | | || || Sbjct 120968 CGCCTGATCAGCAGCGTCTTATCTTCGCAGGAAAGCAACTTGATGACGGCAGGACTCTTT 121027 Query 27575 CAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 | || || || | || |||||| ||| ||||| Sbjct 121028 CGGATTACAACATTCAGAAGGAAAGCACCCTTCA 121061 >seq71 Length=9838 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 146794 TACTACCAGATGCAGACGCGCAGCGCCGACGAGCCGATGACGGCGTTCATCACCTGCCTG 146853 |||| ||| |||||||| |||||| |||||||||| ||||| | ||| |||| ||||| Sbjct 2038 TACTTCCAAATGCAGACTCGCAGCTCCGACGAGCCCATGACCACCTTCGTCACTTGCCTC 2097 Query 146854 AATTGCTCTAACCGCTGGAAGTGCTAG 146880 || ||| ||||||||||||| |||| Sbjct 2098 AACTGCGGCAACCGCTGGAAGTTCTAG 2124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570283973241840