Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2272 98.7 6e-16 seq3418 87.8 1e-12 seq1882 87.8 1e-12 >seq2272 Length=181047 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || ||||| ||||| |||||||| ||||| ||||| || | |||| ||| Sbjct 121067 ACCAAGTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCA 121008 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||| || || || || || | |||||| || || ||||| | |||||||||||| | Sbjct 121007 AGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGG 120948 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 || ||| | || || | || ||||| ||||| || | || || ||||| Sbjct 120947 AT-TTTGGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTT 120889 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || | || ||||| || |||||||| || Sbjct 120888 TCCTGTAAGGGTCTTCACGAAGATCTGCATCTT 120856 >seq3418 Length=21158 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || |||| |||||| || || || ||| || |||||||| ||||| || Sbjct 209 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 268 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || | |||| || || || || || || || || | |||||| || || || || Sbjct 269 CAGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGG 328 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||| |||| || || | || |||||| ||||| Sbjct 329 AATGCCCTCCTTGTC-CTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCA 387 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTG 34710 | || | || || || || || || | || |||||||| ||||||| ||||| Sbjct 388 CATCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCATTGTTG 441 >seq1882 Length=48858 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || |||| |||||| || || || ||| || |||||||| ||||| || Sbjct 48480 GCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGA 48539 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || | |||| || || || || || || || || | |||||| || || || || Sbjct 48540 CAGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGG 48599 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||| |||| || || | || |||||| ||||| Sbjct 48600 AATGCCCTCCTTGTC-CTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCA 48658 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | || || || || || || | || |||||||| ||||||||| Sbjct 48659 CATCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCATG 48708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314715380811731