Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3418 149 5e-31 seq1882 147 2e-30 seq2272 116 3e-21 >seq3418 Length=21158 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || || ||| | || ||||| || ||||| ||||| Sbjct 436 ATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 377 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || ||| ||||| ||||| || ||||| || || ||||| Sbjct 376 GACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 317 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || |||| ||| | ||| | || ||||||||| Sbjct 316 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAAC 257 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| ||| | || ||||| |||| || | |||||||| Sbjct 256 ATTCAGAAAGAGTCTACCCTTCACTTGGTGCTGCGCCTGAGAGGTGGCAT 207 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || || ||| | || ||||| || ||||| ||||| Sbjct 209 CATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTC 150 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || ||| ||||| ||||| || ||||| || || ||||| Sbjct 149 AGACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCA 90 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || |||| ||| | ||| | || |||||||| Sbjct 89 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAA 30 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGG 27195 |||||| || ||||| ||| | || |||| Sbjct 29 CATTCAGAAAGAGTCTACCCTTCACTTGG 1 >seq1882 Length=48858 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || || ||| | || ||||| || ||||| ||||| Sbjct 48708 CATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTC 48649 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || ||| ||||| ||||| || ||||| || || ||||| Sbjct 48648 AGACACCATCGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCA 48589 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || |||| ||| | ||| | || |||||||| Sbjct 48588 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAA 48529 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||| ||| | || ||||| |||| || | |||||||| Sbjct 48528 CATTCAGAAAGAGTCTACCCTTCACTTGGTGCTGCGCCTGAGAGGTGGCAT 48478 Score = 98.7 bits (108), Expect = 9e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 27071 AAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAA 27130 ||| ||||| ||||| || ||||| || || ||||| |||||| | || | ||||||||| Sbjct 48852 AAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAGCAGCGTCTGATCTTCGCCGGCAA 48793 Query 27131 ACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACA 27190 || |||| || | ||| | || |||||||||||||| || ||||| ||| | || Sbjct 48792 GCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAACATTCAGAAAGAGTCTACCCTTCA 48733 Query 27191 TTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||| || | |||||||| Sbjct 48732 CTTGGTGCTGCGCCTGAGAGGTGGCAT 48706 >seq2272 Length=181047 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || || | || ||||| || |||||||| ||| Sbjct 120859 ATGCAGATCTTCGTGAAGACCCTTACAGGAAAAACCATCACTCTCGACGTGGAACCTTCC 120918 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| |||||||| || ||||| || || ||||| Sbjct 120919 GACACCATCGAAAATGTGAAGGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGATCAG 120978 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || ||| | || ||| | ||| |||| ||||||||| Sbjct 120979 CAGCGTCTTATCTTCGCAGGAAAGCAACTTGATGACGGCAGGACTCTTTCGGATTACAAC 121038 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| ||||| ||| | || ||||| Sbjct 121039 ATTCAGAAGGAAAGCACCCTTCACTTGGT 121067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434898246968640