Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1882 194 4e-44 seq3418 192 1e-43 seq2272 159 8e-34 >seq1882 Length=48858 Score = 194 bits (214), Expect = 4e-44 Identities = 170/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || |||||||| || ||||| ||||| | || |||||||| || Sbjct 48496 AGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCC 48555 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || |||||||||| || ||||||||| Sbjct 48556 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCC 48615 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| ||||| || ||||||||||| || || || ||||||||||| ||| Sbjct 48616 TGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTC 48675 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| ||||| | |||||| Sbjct 48676 TTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 48707 Score = 129 bits (142), Expect = 1e-24 Identities = 106/129 (82%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || |||||||| || ||||| ||||| | || ||||||||||| Sbjct 48724 AGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCC 48783 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || |||||||||| || ||||||||| Sbjct 48784 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCC 48843 Query 211023 TGGATCTTT 211031 || |||||| Sbjct 48844 TGAATCTTT 48852 >seq3418 Length=21158 Score = 192 bits (212), Expect = 1e-43 Identities = 165/204 (81%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || |||||||| || ||||| ||||| | || |||||||| || |||||||| Sbjct 5 GTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGCTG 64 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| |||||||| || || || || |||||||||| || ||||||||||| ||||| Sbjct 65 CTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAATCTT 124 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | ||||| || ||||||||||| || || || ||||||||||| ||||| ||||| Sbjct 125 TGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCCCGT 184 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| | |||||| Sbjct 185 GAGGGTCTTCACAAAGATCTGCAT 208 Score = 190 bits (210), Expect = 5e-43 Identities = 170/213 (80%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || |||||||| || ||||| ||||| | || |||||||| || Sbjct 225 AGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCC 284 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || |||||||||| || ||||||||| Sbjct 285 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCC 344 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| ||||| || ||||||||||| || || || ||||||||||| ||| Sbjct 345 TGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTC 404 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || |||||||| ||||| | ||||||| Sbjct 405 TTCCCTGTAAGAGTCTTCACAAAGATCTGCATT 437 >seq2272 Length=181047 Score = 159 bits (176), Expect = 8e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| ||| || || || ||||| ||||||| ||| ||||| || || || || || Sbjct 121062 GTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAAGTTG 121003 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| |||||||||||||| || || || ||||| || | || |||||||| ||||| || Sbjct 121002 CTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGATTTT 120943 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||||| |||||||||||||| || ||| || ||||||||||| || ||||| || Sbjct 120942 GGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTCCTGT 120883 Query 211091 GAGAGTCTTTACAAACACCTGCATTTTA 211118 || ||||| || || | |||||| ||| Sbjct 120882 AAGGGTCTTCACGAAGATCTGCATCTTA 120855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159096944989055