Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1882 96.9 3e-15 seq2272 95.1 1e-14 seq3418 91.5 1e-13 >seq1882 Length=48858 Score = 96.9 bits (106), Expect = 3e-15 Identities = 170/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 39042 CTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTG 39101 || |||| || || ||| ||||| | ||| | |||||| || || || |||||| || Sbjct 48467 CTCAAATCTA--CATGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTG 48524 Query 39102 TATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACG 39161 || || ||||| | || || | | |||| || ||||| ||||| || || || ||||| Sbjct 48525 AATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACG 48584 Query 39162 CTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCG 39220 |||||| || | || | || ||| |||||| ||| | | || || | || | | | Sbjct 48585 CTGCTGATCAGGAGGAATGCCCTCCTTGTCC-TGAATCTTTGCCTTCACATTCTCGATGG 48643 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | || || |||||| || | ||||| | || ||||| || || || |||||||| | Sbjct 48644 TGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCT 48703 Query 39281 GCAT 39284 |||| Sbjct 48704 GCAT 48707 >seq2272 Length=181047 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||||| || || || || || ||||| | ||| || | |||||||| Sbjct 121067 ACCAAGTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCA 121008 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 || || || || || || |||||||||||||| || | || | || ||| ||||| | Sbjct 121007 AGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGG 120948 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| || | | | | || ||| | |||||||| | ||||| ||||| Sbjct 120947 ATTTTGGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTT 120888 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || || || || || || ||||| |||||||| Sbjct 120887 CCTGTAAGGGTCTTCACGAAGATCTGCATCTT 120856 >seq3418 Length=21158 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | ||| | |||||| || || || |||||| || || || ||||| Sbjct 206 CATGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATC 265 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || | | |||| || ||||| ||||| || || || ||||||||||| || | Sbjct 266 AGACAGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGG 325 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACT 39232 || | || ||| |||||| ||| | | || || | || | | || || || || Sbjct 326 AGGAATGCCCTCCTTGTCC-TGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCT 384 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || | ||||| | || || || || || || |||||||| ||||| Sbjct 385 CCACATCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCAT 436 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 39077 CCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAA 39136 |||| || || || |||||| || || || ||||| | || || | | |||| || | Sbjct 1 CCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCA 60 Query 39137 GCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGA 39196 |||| ||||| || || || ||||||||||| || | || | || ||| |||||| ||| Sbjct 61 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCC-TGA 119 Query 39197 TTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 | | || || | || | | || || || |||||| || | ||||| | || Sbjct 120 ATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTC 179 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || |||||||| ||||| Sbjct 180 CCCGTGAGGGTCTTCACAAAGATCTGCAT 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429526193532491