Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3418 107 1e-18 seq1882 102 6e-17 seq2272 95.1 8e-15 >seq3418 Length=21158 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||||||||| || || ||||||||||| || || | | Sbjct 208 ATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 149 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | || ||||| || || | || || ||||| Sbjct 148 GACACCATCGAGAATGTGAAGGCAAAGA-TTCAGGACAAGGAGGGCATTCCTCCTGATCA 90 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || ||||| |||| | | || | |||||||| Sbjct 89 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAA 30 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 29 CATTCAGAAAGAGTCTAC 12 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || || || || || || ||||||||||| || || | | Sbjct 437 AATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCCGTC 378 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || |||| | || ||||| || || | || || |||| Sbjct 377 AGACACCATCGAGAATGTGAAGGCAAAGA-TTCAGGACAAGGAGGGCATTCCTCCTGATC 319 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || || || ||||| || ||||| |||| | | || | ||||||| Sbjct 318 AGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACA 259 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 258 ACATTCAGAAAGAGTCTAC 240 >seq1882 Length=48858 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||||||||| || || ||||||||||| || || | | Sbjct 48707 ATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCGTCA 48648 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | || ||||| || || | || || ||||| Sbjct 48647 GACACCATCGAGAATGTGAAGGCAAAGA-TTCAGGACAAGGAGGGCATTCCTCCTGATCA 48589 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| || ||||| |||| | | || | |||||||| Sbjct 48588 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGAAGGACGCTGTCTGATTACAA 48529 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 48528 CATTCAGAAAGAGTCTAC 48511 >seq2272 Length=181047 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||| |||||||| ||||| || ||||| || |||||||| ||||||||||| || || | Sbjct 120855 TAAGATGCAGATCTTCGTGAAGACCCTTACAGGAAAAACCATCACTCTCGACGTGGAACC 120914 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | |||| | || ||||| ||||| || || | ||||| || Sbjct 120915 TTCCGACACCATCGAAAATGTGAAGGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGA 120974 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || || || || ||||| || |||| | ||| | ||||| Sbjct 120975 TCAGCAGCGTCTTATCTTCGCAGGAAAGCAACTTGATGACGGCAGGACTCTTTCGGATTA 121034 Query 23787 CAACATACAAAAAGA 23801 |||||| || || || Sbjct 121035 CAACATTCAGAAGGA 121049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337994329043156