Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3418 134 3e-26 seq1882 134 3e-26 seq2272 127 5e-24 seq222 123 6e-23 >seq3418 Length=21158 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || || || ||||| || | |||||||| | || || || || || Sbjct 224 CAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTC 283 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||||||||| || || || || || || ||||| || |||||||| Sbjct 284 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTC 343 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || |||||| ||||||| |||||||||||||| | ||||| || | ||||| || Sbjct 344 CTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGT 403 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || || | ||| || | || | |||||| Sbjct 404 CTTCCCTGTAAGAGTCTTCACAAAGATCTGCATT 437 Score = 127 bits (140), Expect = 5e-24 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || || ||||| || | |||||||| | || || || || || || ||||| Sbjct 5 GTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGCTG 64 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || |||||||| || || || || || || ||||| || |||||||| || ||||| Sbjct 65 CTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAATCTT 124 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | ||||||| |||||||||||||| | ||||| || | ||||| ||||| ||||| Sbjct 125 TGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCCCGT 184 >seq1882 Length=48858 Score = 134 bits (148), Expect = 3e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || || || ||||| || | |||||||| | || || || || || Sbjct 48495 CAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTC 48554 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||||||||| || || || || || || ||||| || |||||||| Sbjct 48555 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTC 48614 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || |||||| ||||||| |||||||||||||| | ||||| || | ||||| || Sbjct 48615 CTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGT 48674 Query 225681 CTTGCCCGT 225689 ||| ||||| Sbjct 48675 CTTCCCCGT 48683 >seq2272 Length=181047 Score = 127 bits (140), Expect = 5e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || ||| ||| || || | |||||||| | | ||| || || || || || || Sbjct 121062 GTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAAGTTG 121003 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || ||||||||||| || || || || ||||| || || |||||||||||||| || Sbjct 121002 CTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGATTTT 120943 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||||| |||||||||||| || | ||||||||| | ||||| || || || || Sbjct 120942 GGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTCCTGT 120883 Query 225690 CAAAGTTTTTATGAACACTTGCATTTTA 225717 | || || | ||| | ||||| ||| Sbjct 120882 AAGGGTCTTCACGAAGATCTGCATCTTA 120855 >seq222 Length=5187 Score = 123 bits (136), Expect = 6e-23 Identities = 112/140 (80%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 7723 TTATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCG 7782 ||||||| || ||||||| ||||| |||||| ||| ||||||||||||| |||||||| Sbjct 187 TTATTTCAAGCTCTGGTAAGGTTCTTCGCGTTACATCGAATTAAACCACATGCTCCACCG 246 Query 7783 CTTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTG 7842 ||| | | | | |||||| || |||| ||||| | |||||| |||| |||||||| | Sbjct 247 CTTGTGCGAGCCCCCGTCAATTCCTTTAAGTTTCACTCTTGCGAGCGTACTACTCAGGCG 306 Query 7843 GAATA-TTTACGCGTTAGCT 7861 | ||| || ||||||||||| Sbjct 307 GGATACTTAACGCGTTAGCT 326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192474559612658