Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3418 129 1e-24 seq1882 123 6e-23 seq2272 116 9e-21 >seq3418 Length=21158 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||||||||| || ||||||||||| | | || || || || || | Sbjct 2 CAAG-TGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCA 60 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | |||||| || | | || || ||||| || |||| Sbjct 61 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAA 120 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || ||| |||| | | ||||||| ||| || || ||||| || || || | Sbjct 121 TCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCC 180 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| |||||||| |||| |||||| Sbjct 181 CCGTGAGGGTCTTCACAAAGATCTGCAT 208 Score = 122 bits (134), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||||||||| || ||||||||||| | | || || || || || | Sbjct 230 CAAG-TGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCA 288 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | |||||| || | | || || ||||| || |||| Sbjct 289 GCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAA 348 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || ||| |||| | | ||||||| ||| || || ||||| || || || | Sbjct 349 TCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCC 408 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||||||||| |||| ||||||| Sbjct 409 CTGTAAGAGTCTTCACAAAGATCTGCATT 437 >seq1882 Length=48858 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||||||||| || ||||||||||| | | || || || || || | Sbjct 48501 CAAG-TGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCA 48559 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | |||||| || | | || || ||||| || |||| Sbjct 48560 GCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAA 48619 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || ||| |||| | | ||||||| ||| || || ||||| || || || | Sbjct 48620 TCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCC 48679 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| |||||||| |||| |||||| Sbjct 48680 CCGTGAGGGTCTTCACAAAGATCTGCAT 48707 >seq2272 Length=181047 Score = 116 bits (128), Expect = 9e-21 Identities = 145/197 (74%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 151914 TCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGA 151971 || || || ||||||||||| | | ||| || || || || || ||||| || |||| Sbjct 121049 TCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAAGTTGCTTT--CCTGCGA 120992 Query 151972 AGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAG 152031 ||||||| | |||||| || | || ||| || ||||| ||||| ||||| || ||| Sbjct 120991 AGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGATTTTGGCCTTCACAT 120932 Query 152032 TCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCA 152091 | || | | |||| ||| || || || ||||| || ||||| || || || ||||||| Sbjct 120931 TTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTCCTGTAAGGGTCTTCA 120872 Query 152092 CGAAGACCTGCATTTTA 152108 |||||| |||||| ||| Sbjct 120871 CGAAGATCTGCATCTTA 120855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153765998199397