Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3418 150 4e-31 seq2272 150 4e-31 seq1882 149 1e-30 seq1722 95.1 3e-14 >seq3418 Length=21158 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || |||| || | || ||||| || |||||||| |||| Sbjct 210 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC 269 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| | || ||||| || || || || || ||||||| ||| || || ||| ||| Sbjct 270 AGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 329 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || |||||||| || || | ||||| ||||| || | || || Sbjct 330 ATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACA 389 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||||||||| ||||| || || | |||||| || || ||||||||| Sbjct 390 TCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCATT 437 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| || |||||||| |||| ||||| | || ||||| || || || ||||| ||| Sbjct 18 TCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGCTGCTTGCCGGCGAAG 77 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| || || ||| ||||| ||||||||||| || |||||||| || || | Sbjct 78 ATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTC 137 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | || || ||||||||||| ||||| ||||| | ||||| || Sbjct 138 TCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCACA 197 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 198 AAGATCTGCAT 208 >seq2272 Length=181047 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 282890 TACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTC 282949 ||||| || | |||||||| || || |||||||| || | ||| || | ||| || || Sbjct 121068 TACCAAGTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATC 121009 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 ||||| || || || ||||| | ||| || || ||| ||| || |||||||||||||| Sbjct 121008 AAGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTG 120949 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 ||| || || || || | ||||| ||||| |||| ||| || ||||||||||| || || Sbjct 120948 GATTTTGGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTT 120889 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || | ||||| ||||| |||||||| || Sbjct 120888 TCCTGTAAGGGTCTTCACGAAGATCTGCATCTT 120856 >seq1882 Length=48858 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || |||| || | || ||||| || |||||||| |||| Sbjct 48481 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC 48540 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| | || ||||| || || || || || ||||||| ||| || || ||| ||| Sbjct 48541 AGCGTCCTTCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 48600 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || |||||||| || || | ||||| ||||| || | || || Sbjct 48601 ATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACA 48660 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| ||||| | ||||| || || |||||||| Sbjct 48661 TCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 48707 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || |||| || | || ||||| || |||||||| |||| Sbjct 48709 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGAC 48768 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| | |||||||| || || || ||||| ||||||| ||| || || ||| ||| Sbjct 48769 AGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGA 48828 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTT 283021 || ||||||||||| || |||||||| || Sbjct 48829 ATGCCCTCCTTGTCCTGAATCTTTGCCTT 48857 >seq1722 Length=194924 Score = 95.1 bits (104), Expect = 3e-14 Identities = 290/447 (65%), Gaps = 6/447 (1%) Strand=Plus/Plus Query 273585 ATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAA 273644 ||||| ||||| ||||| || | || | | | |||||| || || || || || Sbjct 163833 ATAATGTCTTTTGGGTTATAGTTGGGGATGAAGGAAGACCACCCTGTTCCGATGCCTTCG 163892 Query 273645 GAACCATTCACCAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCA 273704 ||||| || || | | | || || | ||||||||||| | ||||||||| || | | Sbjct 163893 CTTCCATTGACAAGCACAGTTGGAATGACAGGGACATAATACTTGGGCTCAATCTTTTGA 163952 Query 273705 CCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTC 273764 || || || |||||||| | || || | || |||| ||| || || || || Sbjct 163953 CCCTCTTCATAAAGGTATTCCAGCAGTGGGTCGTCCGCCTCAGGAAAGACTAGACGAGTG 164012 Query 273765 TGAGGATTCAGTTTCGTGAAAATGTA---CCTGGCACTCGCATGGTCCTTGCCACCTTGC 273821 | || || || ||||| ||||| | ||| |||| || || || |||| Sbjct 164013 TACGGCGCGAGCTTGGTGAAGATGTAGCGCGGTGCAGACGCA---TCTTTCCCTCCTTCT 164069 Query 273822 AGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAA 273881 |||||| || || || || | ||| || | || | ||||||||| || || | Sbjct 164070 TTCCTCGAGCCGAATTGTCCAACAGGCTCAAGGAAATTCAGGTTGTTGCTGCCCACAAAC 164129 Query 273882 TCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTG 273941 ||| ||||| | | |||||| || ||||| || |||||||| || || || Sbjct 164130 CGCTGCGCCATGGTTATGATAGTTTGTTGCAGGGACTGTTCTCCGTGGTGGTAAGCACTC 164189 Query 273942 TGTTCGGCGATATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTG 274001 |||||||| | ||||| |||||||| ||||||| || | || ||| |||| Sbjct 164190 TGTTCGGCTACGTAACCTGACAACTGAGCGACCTTCAATTCAGCCTTCGTATTTTTCTTG 164249 Query 274002 AATGCGGAATACAACACCTTCCGCTGC 274028 || | | | ||| ||| || |||||| Sbjct 164250 AAAACTGCAAACAGCACTTTGCGCTGC 164276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046689484140378