Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20necatrix_20[genbank_20GCA_5F000499385.1_202013-11-06] 3,707 sequences; 55,007,932 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3418 113 4e-20 seq1882 111 1e-19 seq2272 96.9 3e-15 >seq3418 Length=21158 Score = 113 bits (124), Expect = 4e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||||||||| || || || || || | |||| || ||||||||||||||||| Sbjct 17 CTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCGTCCTCCAGCTGCTTGCCGGCGAA 76 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACG 41789 ||||| ||||| || || | |||| || |||||||||| ||| | |||| ||||| Sbjct 77 GATCAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCC-TGAATCTTTGCCTTCACAT 135 Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | ||||| || |||||| || | || || || || ||||| || ||||| | Sbjct 136 TCTCGATGGTGTCTGACGGCTCCACATCGAGAGTGATGGTCTTCCCCGTGAGGGTCTTCA 195 Query 41850 CGAAAATCTGCATG 41863 | || ||||||||| Sbjct 196 CAAAGATCTGCATG 209 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||||| || || || ||| ||||||||||| || || || || || | Sbjct 219 AGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTT 278 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || ||||||||||| ||||| ||||| ||||| || || | |||| || |||| Sbjct 279 CCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCC 338 Query 41765 TTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| | |||| ||||| | | ||||| || |||||| || | || Sbjct 339 TTGTCC-TGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGT 397 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| || || |||||||| Sbjct 398 GATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCAT 436 >seq1882 Length=48858 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||||| || || || ||| ||||||||||| || || || || || | Sbjct 48490 AGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTT 48549 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || ||||||||||| ||||| ||||| ||||| || || | |||| || |||| Sbjct 48550 CCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCC 48609 Query 41765 TTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| | |||| ||||| | | ||||| || |||||| || | || Sbjct 48610 TTGTCC-TGAATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCCACATCGAGAGT 48668 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || ||||| || ||||| || || ||||||||| Sbjct 48669 GATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCATG 48708 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||||| || || || ||| ||||||||||| || || || || || | Sbjct 48718 AGGCGCAGCACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTT 48777 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||||||||| ||||| ||||| || || | |||| || |||| Sbjct 48778 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCC 48837 Query 41765 TTGTCCATGATTTTTTGC 41782 |||||| ||| | ||||| Sbjct 48838 TTGTCC-TGAATCTTTGC 48854 >seq2272 Length=181047 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| || || ||||| |||||||||||||| || || || || || | |||| || Sbjct 121067 ACCAAGTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCA 121008 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || ||||| || ||||| || || ||||| || || | || | || ||||||||| | Sbjct 121007 AGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGG 120948 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 ||||| ||||| | |||||| | ||||| || | || || ||||| Sbjct 120947 ATTTTGGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTT 120888 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTTA 41866 || || || ||||| ||||| |||||||| ||| Sbjct 120887 CCTGTAAGGGTCTTCACGAAGATCTGCATCTTA 120855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462282577988400