Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq10131 96.9 7e-15 seq30835 87.8 4e-12 seq378 87.8 4e-12 >seq10131 Length=12152 Score = 96.9 bits (106), Expect = 7e-15 Identities = 261/395 (66%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 281549 GATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGA 281608 |||||||||||| || | ||||||| || |||||| || || ||||| || Sbjct 11767 GATGTCTTTGGGGTTGAAGTTGGGAATAAAAGAAGACCAGCCCGTGCCAATGCCTTCGCT 11708 Query 281609 ACCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACC 281668 |||||| | | |||| | || | | || || ||| | | || |||||||| | || Sbjct 11707 ACCATTGATAAGAATAGTGGGTACGACTGGAACGTAATACTTGGGCTCAATTTTCTGTCC 11648 Query 281669 ATCATCATACAAATACTTCAG--AAGGTTATCATCTGTATCGACGAAAACCTGTCGCGTC 281726 || ||||||| |||| ||| |||| ||||||| || ||| || | || || Sbjct 11647 CTCCTCATACAGGTACTCCAGCAAAGG--GTCATCTGCCTCTGGGAAGACGAGACGGGTG 11590 Query 281727 TTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTG-GTCTTTACCACCCTGCAG 281785 | ||| ||||| |||||||| || | | || || |||||| || || | Sbjct 11589 TAAGGTGCTAGTTTGGTGAAGATGTAAC-GGGGTGCGGATGCGTCTTTCCCTCCTTCTTT 11531 Query 281786 CCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATC 281845 ||||| |||||||| || ||| | |||| | ||| ||||| || || | Sbjct 11530 TCTCGAGCCAAACTGTCCAATAGGCTCGAGGAAGTTCAGGTTGTTGCTGCCAACAAACCG 11471 Query 281846 CTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTG 281905 ||| |||| | | |||||||| || || || ||| |||||||| |||||||| || Sbjct 11470 CTGTGCCATGCTAACGATTGTTTGTTGCAGTGACTGCTCTCCGTGGTGGTAGGCGCTCTG 11411 Query 281906 TTCGGCAACATAACCACTGAACTGTGCTACCTTCA 281940 || || ||||| || | ||| |||||||||| Sbjct 11410 CTCTGCCACATATCCGGACAGCTGCGCTACCTTCA 11376 >seq30835 Length=2835 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| Sbjct 2331 TAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCGCGGGTTCGAGCCCC 2276 >seq378 Length=7501 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| Sbjct 2085 TAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCGCGGGTTCGAGCCCC 2140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057374759997980