Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq30048 114 1e-20 seq207 98.7 9e-16 >seq30048 Length=11763 Score = 114 bits (126), Expect = 1e-20 Identities = 214/307 (70%), Gaps = 8/307 (3%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGAC--GTGTACTCTACAATTTCGGTAC 23084 || ||||| ||||| ||||| |||||||| |||| ||||||| || | |||| | Sbjct 11040 GATGCAAGGTTGCAGACGGCAACCTCGTCA--GGACTTGTGTACTGCACTACTTCGCAGC 10983 Query 23085 ATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAAT 23144 | |||||||| | ||||| ||||| || |||||||||||| || || || | | Sbjct 10982 AGAGATTGCTGGAGCGAATCGTCCCCAAGTTCTGCTGGTTGCTTTTCCGGTTACATGCGT 10923 Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 | |||||||||||| | || || || ||||| | ||| |||| | ||| || ||||| Sbjct 10922 CTTTGTAGAGCATGAAAGGAGTCCCTGTCTCAATCTGAGACTGAAGGATGGCGAACCACA 10863 Query 23205 TAGTCTGAGCGTGAACACGTCGCAC-GTACCTGCCTTCTTCCTCGTACTTTTGGTACAAC 23263 ||| ||| ||| |||| | | |||||| || ||||||||||| ||| | | Sbjct 10862 ACTCCTGGGCGGGAA-TCGTCTTGCGGCCCCTGCCCTCCCTCTCGTACTTTTCGTAGAGC 10804 Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC-GGGCGATTGCATCGGACACATGAG 23322 || ||||| | || | ||| | ||| || |||| | ||| |||||||||||| Sbjct 10803 TTGTTAAATTGCTCGCCCCAGGTGTCTGTCAGCCCAGGGCACTCGCA-CGGACACATGAG 10745 Query 23323 ACTCCAC 23329 ||||| Sbjct 10744 TGTCCAC 10738 Score = 100 bits (110), Expect = 3e-16 Identities = 127/171 (74%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || | || || ||||| || ||| ||| || ||||| ||||||| || |||| Sbjct 10533 TCATGAAGATGTCGGGAATCCAAAGGGCGGGGAAAAGATCGCGTGCGCGCATTTCTTCTT 10474 Query 23412 TGCCGGTGTTCTTTTTCAAAT--CCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAG 23469 | ||| || | |||| | || ||| ||| || || | ||||| ||||||||||||||| Sbjct 10473 TTCCG-TGAT-TTTTGCGGATGTCCAGAAATTCAAAAATGTCCGAATGCCACGGCTCGAG 10416 Query 23470 GTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 |||||| || || ||| | ||| ||||||||||||||||||||| Sbjct 10415 GTAAACCGCCAAGCTTCCCTTCCGCTTGCCGCCGCCCTGATCGACGTAACG 10365 >seq207 Length=10688 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| ||||| || || |||| ||||||||||| || | || || || || Sbjct 10192 AAAATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACGATTACTCTGGATGTGGAGCCT 10133 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||||| || ||| | ||| ||||| || || | || || || Sbjct 10132 TCCGACACGATCGAAAATGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCCCCTGAT 10073 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||| | || || |||||||| ||| |||| || | ||| || || || Sbjct 10072 CAGCAGCGTTTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCAGGACGCTGTCTGACTAC 10013 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTAC 31403 ||||| || ||||| |||||||| || |||| Sbjct 10012 AACATCCAGAAAGAGAGCACTCTTCACCTTGTAC 9979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445581707836320