Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq20301 141 1e-29 >seq20301 Length=13667 Score = 141 bits (156), Expect = 1e-29 Identities = 196/269 (73%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || | | | || ||| | ||||||||||| || ||||| ||||| ||||| Sbjct 5183 GCTAAGCGCCACAGGAAGGTC-CTTAGGGATAACATCCAGGGTATCACTAAGCCTGCTAT 5241 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | ||||| ||||| | ||||| || |||||| | ||||| ||| | || ||||| || Sbjct 5242 TAGGCGTCTTGCTCGCAGGGGTGGTGTGAAGCGTATTTCTGGCTTGATTTACGAAGAAAT 5301 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGA-TGCTTTCCACTATACCG 16610 ||||| ||| ||||| | ||||| ||| | | ||| | || | | || || || || | Sbjct 5302 TCGTGGCGTTCTGAAGGTGTTCCTTGAGAACATCATCAAGGATTCCGTTACA-TACACTG 5360 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| | ||||||||||| ||||||| || |||||| | ||||| || || | Sbjct 5361 AGCACGCCCGCAGAAAGACTGTCACTGCCATGGACATTGTCTATTCCTTGAAGCGCCAGG 5420 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | || | | || ||||| || ||||| Sbjct 5421 GTCGCACCCTCTACGGTTTCGGTGGTTAA 5449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79044894380178