Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq30048 129 2e-24 >seq30048 Length=11763 Score = 129 bits (142), Expect = 2e-24 Identities = 293/436 (67%), Gaps = 16/436 (4%) Strand=Plus/Plus Query 364063 CTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTA 364122 || ||||||||||| || |||||| | || || ||||| |||||||| ||| || | Sbjct 10805 CTCTACGAAAAGTACGAGAGGGAGGGCAGGGGCCGCAAGACGATTCCCGCCCAGGAGTTG 10864 Query 364123 TGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGAT 364182 ||||| |||||| | | || |||||||||||||| || || | ||| | |||||||| Sbjct 10865 TGGTTCGCCATCCTTCAGTCTCAGATTGAGACAGGGACTCCTTTCATGCTCTACAAAGAC 10924 Query 364183 TCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGT 364242 | || ||||| || |||||||||| || | || || |||| ||||| || || Sbjct 10925 GCATGTAACCGGAAAAGCAACCAGCAGAACTTGGGGACGATTCGCTCCAGCAATCTCTGC 10984 Query 364243 ACCGAGATTATTG-AATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGAT 364301 ||| | || || | ||||| ||| |||||| |||||| || |||||||| || | Sbjct 10985 TGCGA-AGTAGTGCAGTACACAAGTCCTGACGAGGTTGCCGTCTGCAACCTTGCATCTGT 11043 Query 364302 CGCGCTTCCGGCGTTTGT--------AAAAGATGGTACTTTTGACCACCAGCATCTTTAT 364353 | ||||| ||||| |||||| | ||||| || | || | || | Sbjct 11044 TTCTCTTCCCCGCTTTGTTGACGTCGAAAAGAAG--TCTTTTAACTTCGAGAAGCTCAAA 11101 Query 364354 GACGTAACCTA--TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATC 364411 | | | | ||||| || |||| | |||| | |||||| |||||||| | Sbjct 11102 AAGATCGTCAAAGTCATG--ACGCGCAACTTGAACAAAATCATCGACCTCAATTATTACC 11159 Query 364412 CAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGG 364471 | |||| ||||| | || || |||| || | ||||| |||||||| || || | Sbjct 11160 CGGTTCCCGAAGCAAATCGAAGCAACCTGCGCCACAGGCCGATCGGTCTTGGCGTCCAAG 11219 Query 364472 GCCTCGCTGACGTTTT 364487 | || ||||| || || Sbjct 11220 GGCTTGCTGATGTATT 11235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302800087720172