Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq21635 131 1e-25 seq207 98.7 7e-16 seq26576 96.9 2e-15 seq10147 96.9 2e-15 >seq21635 Length=3261 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 2488 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2429 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 2428 TAATCCATTCATGCACGTCACTAATTAGATGACGA 2394 Score = 100 bits (110), Expect = 2e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||| |||| |||||||||||||||||||||||| Sbjct 410 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCTTCACAGTACTTGTTCGCTATCGGTCTCGC 351 Query 20007 GGTAATATTTAGCCTTAT 20024 | | |||||||| |||| Sbjct 350 GCCAGTATTTAGCTTTAT 333 >seq207 Length=10688 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||||||||| || || || ||||| ||||||| | | || || | || Sbjct 9987 TGAAGAGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGCGTCCTGCCATCCTCCAGCTGC 10046 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || | || || ||||| | ||| | || |||||||| |||||| Sbjct 10047 TTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGGAATTCCCTCTTTGTCTTGAATTTTG 10106 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||||| | || || || | || || || | ||||| ||||| |||||| Sbjct 10107 GCTTTCACATTTTCGATCGTGTCGGAAGGCTCCACATCCAGAGTAATCGTTTTGCCCGTC 10166 Query 38295 AAGGTTTTCACGAATATCTGCATGTTTTACAA 38326 |||||||||||||| || ||||| || || || Sbjct 10167 AAGGTTTTCACGAAGATTTGCATTTTCTAAAA 10198 >seq26576 Length=343 Score = 96.9 bits (106), Expect = 2e-15 Identities = 81/97 (84%), Gaps = 8/97 (8%) Strand=Plus/Minus Query 25903 AGCCCGTTCCCTTGGCTG---TGGTTTCGCTAGATAGTAGATAGGG--GGT---AATCTC 25954 |||||||||||||||||| ||| ||| |||| ||||| ||||| ||| |||||| Sbjct 125 AGCCCGTTCCCTTGGCTGCCGTGGGTTCTCTAGGTAGTAAGTAGGGACGGTTGGAATCTC 66 Query 25955 GTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| |||||||| |||||||||||| ||||||| Sbjct 65 GTTAATCTTTTCATGCACGTCACTAATTATATGACGA 29 >seq10147 Length=11392 Score = 96.9 bits (106), Expect = 2e-15 Identities = 81/97 (84%), Gaps = 8/97 (8%) Strand=Plus/Minus Query 25903 AGCCCGTTCCCTTGGCTG---TGGTTTCGCTAGATAGTAGATAGGG--GGT---AATCTC 25954 |||||||||||||||||| ||| ||| |||||||| | ||||| ||| |||||| Sbjct 11193 AGCCCGTTCCCTTGGCTGCCGTGGGTTCTTTAGATAGTGGGTAGGGACGGTCGGAATCTC 11134 Query 25955 GTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||||| |||||| ||||| ||||||| Sbjct 11133 GTTAATCCTTTCATGCACGTCACGAATTATATGACGA 11097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334811892426326