Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq207 120 3e-22 seq30938 91.5 1e-13 >seq207 Length=10688 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || || ||||| || || || |||||| | ||||| || ||||| | Sbjct 10192 AAAATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACGATTACTCTGGATGTGGAGCCT 10133 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| || | || || | ||| |||||||||||||| ||||| ||||| || ||| Sbjct 10132 TCCGACACGATCGAAAATGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCCCCTGAT 10073 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||| | || ||||| ||||| ||| | |||||| | | || | || || ||| Sbjct 10072 CAGCAGCGTTTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCAGGACGCTGTCTGACTAC 10013 Query 22396 AACATTCAAAAAGA 22409 ||||| || ||||| Sbjct 10012 AACATCCAGAAAGA 9999 >seq30938 Length=2519 Score = 91.5 bits (100), Expect = 1e-13 Identities = 193/283 (68%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 128782 TCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTT-GGTGCGCAAATAGTACATGCCTGT 128840 || || ||||||||||| ||||| || | |||||| ||| |||| || |||||||| || Sbjct 498 TCAACAGTAAATTTAATGGCGTCTGCAG-CGGCTTGGGTACGCAGGTAATACATGCCAGT 440 Query 128841 TTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTA-GGTGGGTT 128899 || | || | ||| ||| | ||| || |||| | | ||| | | ||||| Sbjct 439 CTTGAGCCCCGCCTGCCAGCCGTGGAAGTGCATAGTGGAGAGCTTGGCGAATGAGGGGTT 380 Query 128900 GACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCA 128959 ||| || || || | |||||| || |||| ||| || | |||||| | |||| Sbjct 379 GAC-CATGTGGATGTTGAGGGATTGAGACTGGTCAACAAAAGGCGCTCGATCGACCGCCA 321 Query 128960 TACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTT 129019 || ||| | | || || ||| || |||||||| ||||| || ||||| | | || | Sbjct 320 TATCAACAATACTTCTCTGTTTTATCTCCCACACGGTTTTATACAGCTCCTTAAGGTCGT 261 Query 129020 TTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAAT 129062 ||| || || ||| ||||||||| ||||||| ||||| Sbjct 260 CTGGAATGTCAGAAATCAACTGCACGCTCCCGTTGTGGGCAAT 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419558443791490