Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq21711 91.5 3e-13 seq20309 91.5 3e-13 >seq21711 Length=3008 Score = 91.5 bits (100), Expect = 3e-13 Identities = 58/62 (94%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 142058 TGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 1740 TGTGGCGCAATCGGATAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAGTCCCG 1681 Query 142117 CC 142118 || Sbjct 1680 CC 1679 Score = 91.5 bits (100), Expect = 3e-13 Identities = 58/62 (94%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 142058 TGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 2378 TGTGGCGCAATCGGATAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAGTCCCG 2319 Query 142117 CC 142118 || Sbjct 2318 CC 2317 >seq20309 Length=13542 Score = 91.5 bits (100), Expect = 3e-13 Identities = 58/62 (94%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 142058 TGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 1804 TGTGGCGCAATCGGATAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAGTCCCG 1863 Query 142117 CC 142118 || Sbjct 1864 CC 1865 Score = 91.5 bits (100), Expect = 3e-13 Identities = 58/62 (94%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 142058 TGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 2394 TGTGGCGCAATCGGATAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAGTCCCG 2453 Query 142117 CC 142118 || Sbjct 2454 CC 2455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027400295055786