Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq207 114 2e-20 seq30413 86.0 1e-11 seq160 86.0 1e-11 seq31858 84.2 4e-11 seq30963 84.2 4e-11 seq30005 84.2 4e-11 seq22422 84.2 4e-11 seq21273 84.2 4e-11 >seq207 Length=10688 Score = 114 bits (126), Expect = 2e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||| | ||| || ||| |||||| |||||||| || || || || ||||| ||||| || Sbjct 9980 TACAAGGTGAAGAGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGCGTCCTGCCATCCTC 10039 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 | |||||| || || || || | | || || || || ||||| || || |||||||| Sbjct 10040 CAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGGAATTCCCTCTTTGTCTTG 10099 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||| || || || || ||||| ||||| | | || || |||| || || ||||| Sbjct 10100 AATTTTGGCTTTCACATTTTCGATCGTGTCGGAAGGCTCCACATCCAGAGTAATCGTTTT 10159 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| | ||| || ||||| || |||||| Sbjct 10160 GCCCGTCAAGGTTTTCACGAAGATTTGCATT 10190 >seq30413 Length=5181 Score = 86.0 bits (94), Expect = 1e-11 Identities = 57/62 (92%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 84458 CCGGT-TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 84516 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||| Sbjct 2256 CCGGTGTAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCC 2197 Query 84517 CC 84518 || Sbjct 2196 CC 2195 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 1772 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 1827 >seq160 Length=12893 Score = 86.0 bits (94), Expect = 1e-11 Identities = 57/62 (92%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 84458 CCGGT-TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 84516 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||| Sbjct 10799 CCGGTGTAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCC 10740 Query 84517 CC 84518 || Sbjct 10739 CC 10738 >seq31858 Length=952 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 441 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 496 >seq30963 Length=2441 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 1891 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 1946 >seq30005 Length=14226 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 2660 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 2605 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 3285 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 3340 >seq22422 Length=1662 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 351 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 406 >seq21273 Length=4675 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 3814 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 3759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921240548799120