Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq21619 107 2e-18 seq5291 86.0 6e-12 >seq21619 Length=3345 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 20222 AACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTG 20281 ||||| ||||| | | | || || |||| | ||| ||||| | |||||| Sbjct 247 AACTCTCCGGGCTTTAAATCACAAATTCGAGCGACCATCAGAGTTAGCAAAGAATAGGAA 306 Query 20282 GCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAA 20341 || ||||||||||||||||| | ||||| ||| | || |||||||||| ||||| Sbjct 307 GCTATGTTAAAAGGAACTCCAAGACCCACGTCGCAACTCCGCTGATACAGCATGCAGGAG 366 Query 20342 AGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAA 20400 || ||||| ||| |||||||| ||||||| |||||| ||||| || | ||||||||| Sbjct 367 AGACAACCGTTAGCCACATAAAACTGACATAGCAAGTGGCAGGGAGGCAACGCCATCAA 425 >seq5291 Length=862 Score = 86.0 bits (94), Expect = 6e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 20192 TAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGA 20251 || ||||||| | | ||||| || | ||||| |||||| | | | | || || Sbjct 678 TAAATGTGGGTGTTTGCCAACACATGGACGAACTCTCCGGGTTTTAAATTACAAATTCGA 737 Query 20252 GCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATG 20311 || | ||| |||||| || ||||| || ||||||||||||||||| | ||||| | Sbjct 738 GCGACCATCAAAGTTAGTAGAGAATAAGAAGCGATGTTAAAAGGAACTCCAAGACCCACG 797 Query 20312 TCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACAT 20371 || | || |||||| ||| ||||| || | |||| ||| |||||||| |||||| Sbjct 798 TCGCAACTCCGCTGATAAAGCATGCAGGAGAGATGGCCGTTAGCCACATAAAACTGACAT 857 Query 20372 AACAA 20376 | ||| Sbjct 858 AGCAA 862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441189928214640