Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq207 132 1e-25 >seq207 Length=10688 Score = 132 bits (146), Expect = 1e-25 Identities = 161/216 (75%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 |||||||| ||||| ||| || |||| ||||||||||| || ||||| ||||| ||| Sbjct 9981 ACAAGGTGAAGAGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGCGTCCTGCCATCCTCC 10040 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 |||||||| || || || || | ||||||||| || || |||||| ||| || ||| Sbjct 10041 AGCTGCTTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGGAATTCCCTCTTTGTCTTGA 10100 Query 199541 ATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 || ||| || ||||| ||||| ||||| | | || ||||||| || ||||| || Sbjct 10101 AT-TTTGGCTTTCACATTTTCGATCGTGTCGGAAGGCTCCACATCCAGAGTAATCGTTTT 10159 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| | |||||||| || ||||| |||||| Sbjct 10160 GCCCGTCAAGGTTTTCACGAAGATTTG---CATTTT 10192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178420931890782