Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq207 89.7 4e-13 >seq207 Length=10688 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/218 (69%), Gaps = 8/218 (4%) Strand=Plus/Plus Query 39506 GCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC-- 39563 || |||| | || | |||||| ||||| || || || || || | || |||| | Sbjct 9976 GCCGTACAAGGTGAAGAGTGCTCTCTTTCTGGATGTTGTAGTCAGACA----GCGTCCTG 10031 Query 39564 --ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCT 39621 ||| |||| || || || ||||||| |||||||||||||| | ||| | || ||| Sbjct 10032 CCATCCTCCAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGGAATTCCCTCT 10091 Query 39622 TTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTA 39681 ||||| ||||| ||| | | | | ||||| | ||||| |||| |||| Sbjct 10092 TTGTCTTGAATTTTGGCTTTCACATTTTCGATCGTGTCGGAAGGCTCCACATCCAGAGTA 10151 Query 39682 ATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| ||||| || ||||| |||||||| ||||| Sbjct 10152 ATCGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 10189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347229274188218