Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq29934 224 7e-53 >seq29934 Length=32083 Score = 224 bits (248), Expect = 7e-53 Identities = 975/1520 (64%), Gaps = 44/1520 (3%) Strand=Plus/Minus Query 517214 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 517273 || ||||| ||||| | ||||| ||| || || |||| |||||| || || | Sbjct 13483 TTGGTAATGGTAATCTGGTTGGACTTGCCAGTATTCTTCTCAGTGGCAGTTACGTTCATG 13424 Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 |||||||| ||||| | ||| || || || || || ||||| || || | | || || Sbjct 13423 ATACCATTCGCATCAATATCGAAAGTAACCTCGATCTGAGGAACACCACGAGGGGCCGGC 13364 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTA--TTATTATCTTTAGTGAATTTTCGTT 517391 || || || || | || || | |||| ||| || || || || || | || | Sbjct 13363 GGAATGCCGTCAAGATGGAACTTGCCCA--TTAGGTTGTTGTCCTTCGTCATCGCGCGCT 13306 Query 517392 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 517451 ||||||| || | ||| || || ||| || || |||| ||| || || || | || Sbjct 13305 CACCCTCAAACACTTGAATCAGCACACCAGGCTGGTTGTCTGCATAGGTAGTGAAGA-TC 13247 Query 517452 TG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCT 517510 || || || || ||||| || ||||| | ||||||| || ||||| | |||||| Sbjct 13246 TGAGACTTCTTCGTCGGAATGGTGGTGTTGCGTTCAATAAGCTTCGTCATGACACCACCA 13187 Query 517511 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTT 517570 || || || | ||| || ||||| |||| ||||| | || | | | ||| | | Sbjct 13186 GCCGTCTCCAGACCGAGGGAAAGCGGAGCAACATCGAGCAGCAACAGGTCTTGCACCTGC 13127 Query 517571 TCATCAGTTTG-ACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 517629 | | ||| ||| || |||||||| |||| ||| ||||| || || || || || Sbjct 13126 G-AGCTGTTCACACCCTTGAGGATAGCTGCCTGAACAGCTGCACCGTAAGCCACGGCCTC 13068 Query 517630 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT 517689 || || |||| | | | || || ||||| || | | ||| || Sbjct 13067 GTCGGGGTTAATGGAACGGCAAGGCTCCTTTCCGTTGAAGAATTCCTGGATAAGCTGCTG 13008 Query 517690 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC-CTGTGATTTAT 517748 | ||| |||||||||| || || ||||| | |||| || ||||| ||| | || || Sbjct 13007 GATCTTTGGAATACGAGTGGAGCCGCCAACAAGCACAACCTCGTGCACGCTGCGCTT-AT 12949 Query 517749 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG--ACCCGCTCTAAACAAGTC 517806 | | |||| | || || || ||||| |||| | || ||| || | Sbjct 12948 CAATGCCACTATCCTTCAGCACCTTCTCCACGGGCACAAGGGAATTGCGG-AAATAATCC 12890 Query 517807 -TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGA 517865 || |||| || || ||| | || | | ||||| || ||| ||||| ||||| | Sbjct 12889 ATGCACAAC--TCCTCAAATCTCGCACGGGAAAGAGAAACGGAATAGTCAATACCTTCAA 12832 Query 517866 ACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTT 517925 | | ||| |||| ||| || || | || || || |||| ||||| || |||| Sbjct 12831 AGAGAGAGTCAATTTCGATGGTCGCCTGTGTGCTGCTGGAAAGTGTGCGTTTTGCCCGTT 12772 Query 517926 CACATGCTGTCCTTAGTCTTCGTAA-----GGCTTTTGCTGATTGATTCAAATCTGTTTT 517980 | || ||| | || | || | |||| || || | | || ||| Sbjct 12771 CGCACTGTGTTCGAAGACGCCGAAGCGCACGGCTGTTTGTGCTAGGGTCCTTGCTGCG-- 12714 Query 517981 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 518040 || |||||||||||||| | |||||| | ||| || || || |||||||| || || Sbjct 12713 ATTCTTTCTCTTGAAATCCTGAACACAGAAGTCTACCAGGCGGTTGTCAAAATCCTCTCC 12654 Query 518041 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 518100 ||||| | |||| || | || || | || | ||| | ||||| || | | | Sbjct 12653 GCCCAAGTGGGTATCACCAGCAGTGGCCTTCACCTCGAAGATACCATCCTCGATGGTTAG 12594 Query 518101 AAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 518160 ||||| ||||| ||| || || ||||| || ||||| || || ||||| || | | Sbjct 12593 AAGAGAAACATCGAAGGTACCGCCTCCCATGTCGAAAATGAGAACGTTCATCTC---GCC 12537 Query 518161 TTGG---TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCT 518217 ||| || ||||| |||||||| |||| || ||||| || ||||| || ||||| | Sbjct 12536 GTGGCCCTTCTTATCTAGACCATAGGCAATGGCTGCAGCTGTGGGTTCGTTGATAATACG 12477 Query 518218 CAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTT 518277 || ||||| ||||| || || | || |||||||| || || || | || |||||||| Sbjct 12476 CAGCACATTCAGACCGGCGATCGTACCAGCATCTTTTGTAGCCTGACGCTGGGAATCGTT 12417 Query 518278 AAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGC 518337 || || || ||||||||||||||||| || | || || || ||||| | || || Sbjct 12416 GAAGTAAGCGGGAACAGTAATAACGGCCTCTTTCACATCCTTGCCAATGAAGGCCTCAGC 12357 Query 518338 CGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--GGAATAT-TGCTT 518394 ||| ||||| || | || | ||||| |||| | || || |||| | | ||| Sbjct 12356 AATTTCCTTCATCTTCATCAACACCATTGCCGAAACCTCCTCGGGATGGAACGTCTTCTT 12297 Query 518395 GGATTCATTTTGATATGATACTTCAA-AATATGGTTTATT-----ACCAACATTAATAAC 518448 || | |||||| ||||||| || | ||| | || | || | || Sbjct 12296 AGACCC---TTGATAGTTAACTTCAATAAGCGGCTTTCCTGCGGCTCCTGCCTTCACCAC 12240 Query 518449 TTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAAT 518508 || ||||||| ||||| || || || || | |||| || | || || || Sbjct 12239 ---GAAGGGCCAGTGCTTCATGTCGGACTGGACTGCGGGATCATCGAACTTCCTCCCGAT 12183 Query 518509 TAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGC 518568 | || || ||||| || | |||||| ||||| |||| | |||| || ||||| Sbjct 12182 GAGGCGCTTAGCATCGAAGACAGTATTTTCCGGATTCCTTGCCACCTGATTCTTTGCTGC 12123 Query 518569 ATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACC 518628 |||||||| ||| |||| || || || || | ||||| || || || || | || || Sbjct 12122 ATCTCCAACAAGACGTTCGGTATCGGTGAAAGCGACATAAGAGGGGGTGGTCCTGTTGCC 12063 Query 518629 TTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGT 518688 || || || || || ||||| || | | |||| ||| ||||| || ||| | || Sbjct 12062 CTGGTCGTTAGCGATGATTTCCACGCCATCGTTTTTCCACACACCGACGCAAGAGTACGT 12003 Query 518689 TGTTCCTAAATCAATACCAA 518708 || || | ||| || |||| Sbjct 12002 CGTGCCAAGATCGATTCCAA 11983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779177586297076