Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq29934 302 6e-77 seq9997 131 2e-25 >seq29934 Length=32083 Score = 302 bits (334), Expect = 6e-77 Identities = 1079/1660 (65%), Gaps = 54/1660 (3%) Strand=Plus/Minus Query 6517 ATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGAC---CTTTTTCGCGTACTTTTCATC 6573 ||| || |||||||| | | ||||||| || ||||| || ||| || ||| || Sbjct 13610 ATAGCAATAGTTTTCCAAAGCATTCTTTGCTTCGACACGCTGTTT---GTTGGCTTCGTC 13554 Query 6574 TTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCT 6633 ||| | || || || || || ||| ||||| || || || | | | | ||| | Sbjct 13553 CTCAGCCTTGTATTTCTCTGCCTCTGCCACCATACGATCGATCTCGT-TCTGGCTAAGCC 13495 Query 6634 C-CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCAC 6692 ||||| || || ||||| ||||||| | ||| || || | ||| || ||| Sbjct 13494 GACCCTTGTCGTTGGTAATGGTAATCTGGTTGGACTTGCCAGTATTCTTCTCAGTGGCAG 13435 Query 6693 TTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCC 6752 |||| |||| |||||||| ||||||| |||||| | || | || || || ||| | Sbjct 13434 TTACGTTCATGATACCATTCGCATCAATATCGAAAGTAACCTCGATCTGAGGAACACCAC 13375 Query 6753 TCGGTGCGGCTGGAATACCCGTTAA-ATCAAATGTACCAAGTAAACTGTTATCCGTCGCC 6811 || || | ||||| || || || || || | || | || |||| ||| ||| | Sbjct 13374 GAGGGGCCGGCGGAATGCC-GTCAAGATGGAACTTGCCCATTAGGTTGTTGTCCTTCGTC 13316 Query 6812 TTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTT 6871 || || ||||| ||| | |||| ||| ||| |||| || || ||| || Sbjct 13315 ATCGCGCGCTCACCCTCAAACACTTGAATCAGCACACCAGGCTGGTTGTCTGCATAGGTA 13256 Query 6872 GAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATA 6931 | |||||| || ||||| | ||||| || || || | ||||| | ||||| Sbjct 13255 GTGAAGATCTGAGACTTCTTCGTCGGAATGGTGGTGTTGCGTTCAATAAGCTTCGTCATG 13196 Query 6932 ATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCT 6991 | |||||| || || || || || || || || | || || | || ||||||||| Sbjct 13195 ACACCACCAGCCGTCTCCAGACCGAGGGAAAGCGGAGCAACATCGAGCAGCAACAGGTCT 13136 Query 6992 TGAACAGATTCGTTCCCTT--CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATG 7049 || || | || | || ||||| | | ||| || || || || | || ||||| | Sbjct 13135 TG--CACCTGCGAGCTGTTCACACCCTTGAGGATAGCTGCCTGAACAGCTGCACCGTAAG 13078 Query 7050 CGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC--GA 7107 | || ||||| ||||||||||| | | || || ||||| || | ||| || Sbjct 13077 CCACGGCCTCGTCGGGGTTAATGGAACGGCAAGGCTCCTTTCCGTTGAAGAATTCCTGGA 13018 Query 7108 TAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCAC 7167 || | || || || || || || || || || || || || | || | || | ||| Sbjct 13017 TA--AGCTGCTGGATCTTTGGAATACGAGTGGAGCCGCCAACAAGCACAACCTCGTGCAC 12960 Query 7168 TTTCGATTTATCGAT----CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATT 7223 | ||||| || || | || || || || || || | | | | Sbjct 12959 GCTGCGCTTATCAATGCCACTATCCTTC----AGCACCTTCTCCACGGGCACAAGGGAAT 12904 Query 7224 TACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGA---TGTATAGA 7280 | ||||| | ||||| |||| |||||||| | ||||||| || || | |||| Sbjct 12903 TGCGGAAATAATCCATGCACAACTCCTCAAATCTCGCACGGGAAAGAGAAACGGAATAG- 12845 Query 7281 AATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTG--TTTGTGCCGTCGAAGATAA 7338 |||| || || | | || |||||||| ||||| | | ||||| | | || | Sbjct 12844 --TCAATACCTTCAAAGAGAGAGTCAATTTCGATGGTCGCCTGTGTGCTGCTG--GAAAG 12789 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || || ||||| || || ||| ||||| | ||| ||||| ||||| ||| | Sbjct 12788 TGTGCGTTTTGCCCGTTCGCACTGTGTTCGAAGACGCCGAAGCGCACGGCTGTTTGTGCT 12729 Query 7399 AATAT-CTTTCT--TATGTTTACGTTTAAACTCTT---CAGAGAAGTGTCGAAGGAGTCT 7452 | | ||| || || || | || || || | || |||||| | ||| | | Sbjct 12728 AGGGTCCTTGCTGCGATTCTTTCTCTTGAAATCCTGAACACAGAAGTCTACCAGGCGGTT 12669 Query 7453 CGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGAT 7512 || ||||| || || |||||||| ||||| || || || || || || || ||||| Sbjct 12668 ---GTCAAAATCCTCTCCGCCCAAGTGGGTATCACCAGCAGTGGCCTTCACCTCGAAGAT 12612 Query 7513 ACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAG 7572 ||| | || ||| ||| | |||||||| || ||||| || |||| ||| |||||||| Sbjct 12611 ACCATCCTCGATGGTTAGAAGAGAAACATCGAAGGTACCGCCTCCCATGTCGAAAATGAG 12552 Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 |||||| | ||| ||| |||||||| ||||| || || || || || || || || Sbjct 12551 AACGTTCATCTCGCCGTGGCCCTTCTTATCTAGACCATAGGCAATGGCTGCAGCTGTGGG 12492 Query 7633 TTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 ||| || |||||||| || ||| ||||| || || || || | |||||||| || || | Sbjct 12491 TTCGTTGATAATACGCAGCACA-TTCAGACCGGCGATCGTACCAGCATCTTTTGTAGCCT 12433 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 | || || |||||||| ||||| || || || || | || || || | || | ||| | Sbjct 12432 GACGCTGGGAATCGTTGAAGTAAGCGGGAACAGTAATAACGGCCTCTTTCACATCCTTGC 12373 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 | | | | || || || || ||||| || | | ||||| | |||| ||| || | Sbjct 12372 CAATGAAGGCCTCAGCAATTTCCTTCATCTTCATCAACACCATTGCCGAAACCTCCTCGG 12313 Query 7812 CCGCAAACTGTTTCGTTTCACCGTT-AAAATCAACTTCAATCATGGGTTTATCCGCAGCA 7870 ||| || | || ||| || | | | ||||||||| | || || | || || Sbjct 12312 GATGGAAC-GTCTTCTTAGACCCTTGATAGTTAACTTCAATAAGCGGCTTTCCTGCGGCT 12254 Query 7871 CCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGG-TCCGAAAA 7929 || | | ||| | | ||| | ||||| ||| |||| ||| || || || Sbjct 12253 CCTGCCTTCACCACGAAGGGCCAGTGCTTCATGTCGGACTGGA-CTGCGGGATCATCGAA 12195 Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989 ||| || ||||| || ||||| ||||| || || || |||| || ||| | || || Sbjct 12194 CTTCCTCCCGATGAGGCGCTTAGCATCGAAGACAGTATTTTCCGGATTCCTTGCCACCTG 12135 Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049 ||||| || || || || | ||||||||| || || || || ||||| || || || Sbjct 12134 ATTCTTTGCTGCATCTCCAACAAGACGTTCGGTA---TCGGTGAAAGCGACATAAGAGGG 12078 Query 8050 GGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCC 8109 ||| || | || || |||||||| || || ||||| |||| ||||||| ||| || || Sbjct 12077 GGTGGTCCTGTTGCCCTGGTCGTTAGCGATGATTTCCACGCCATCGTTTTTCCACACACC 12018 Query 8110 GACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCT 8149 |||||| || ||||| || || | ||| || || | |||| Sbjct 12017 GACGCAAGAGTACGTCGTGCCAAGATCGATTCCAACTGCT 11978 >seq9997 Length=26252 Score = 131 bits (144), Expect = 2e-25 Identities = 186/262 (71%), Gaps = 6/262 (2%) Strand=Plus/Minus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 || ||||||||||| ||||| || || || | | ||| | | || | ||||| | Sbjct 3412 GACACATCAAACGTGCCACCGCCAAGATCGTATACGAGGATGGTCTTTTCGTCCT----- 3358 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||||| | ||| || || ||||| ||||| || ||||| || || ||||||| | | Sbjct 3357 -TCTTATCCAAACCATAAGCAATAGCGGCCGCAGTGGGTTCGTTGATGATACGAATAACG 3299 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || ||||| | | ||||| ||||| || || ||||||| |||||| || || Sbjct 3298 TTGAGACCTGCAATGGCGCCTGCATCCTTCGTTGCCTGGCGTTGCGCATCGTTGAAATAT 3239 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || || || |||| | | || | ||| || | ||| ||| || | || Sbjct 3238 GCTGGGACGGTAACAACGGCGTTCTTCACCTCCTTTCCCAAATAGCTTTCTGCAACCTCC 3179 Query 7775 TTCATTTTGGTAAGAACCATCG 7796 ||||| || ||||||||||| Sbjct 3178 TTCATCTTTCCAAGAACCATCG 3157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634869648602640