Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq29934 187 2e-41 seq207 100 2e-15 >seq29934 Length=32083 Score = 187 bits (206), Expect = 2e-41 Identities = 373/547 (68%), Gaps = 13/547 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || || || || ||| || ||||| ||| |||| | | || ||| Sbjct 11985 GGAATCGATCTTGGCACGACGTACTCTTGCGTCGGTGTGTGGAAAAACGATGGCGTGGAA 12044 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || || || || || || || ||||| || || || |||||||| ||||||| || || Sbjct 12045 ATCATCGCTAACGACCAGGGCAACAGGACCACCCCCTCTTATGTCGCTTTCACCGATACC 12104 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 |||| | | ||||| ||||||||||| |||| | | | ||||| |||||| | Sbjct 12105 GAACGTCTTGTTGGAGATGCAGCAAAGAATCAGGTGGCAAGGAATCCGGAAAATACTGTC 12164 Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATG 550237 || |||||||| || | || || || | || ||||| | | || ||| | || ||| Sbjct 12165 TTCGATGCTAAGCGCCTCATCGGGAGGAAGTTCGATGATCCCGCAGTCCAGTCCGACATG 12224 Query 550238 AAGCATTGGCCTTTCCAAATTGTTAA------TGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||| ||||| ||| | || || | | ||||| || |||||||| | Sbjct 12225 AAGCACTGGCCCTTC---GTGGTGAAGGCAGGAGCCGCAGGAAAGCCGCTTATTGAAGTT 12281 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTTAAT 550350 | || |||| ||| || | || || || || | |||| | ||||| || || Sbjct 12282 AACTATCAAGGGTCT-AAGAAGACGTTCCATCCCGAGGAGGTTTCGGCAATGGTGTTGAT 12340 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 ||| ||||| ||| || || || |||| | || || | || || || || || Sbjct 12341 GAAGATGAAGGAAATTGCTGAGGCCTTCATTGGCAAGGATGTGAAAGAGGCCGTTATTAC 12400 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG-ACGTATTG 550469 ||| || || || || || || || || ||||| ||||| ||||||||||| ||| || | Sbjct 12401 TGTTCCCGCTTACTTCAACGATTCCCAGCGTCAGGCTACAAAAGATGCTGGTACG-ATCG 12459 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | || || ||||| || ||||||||||| ||||| || ||||| || |||| ||||| | Sbjct 12460 CCGGTCTGAATGTGCTGCGTATTATCAACGAACCCACAGCTGCAGCCATTGCCTATGGTC 12519 Query 550530 TTGATAA 550536 | ||||| Sbjct 12520 TAGATAA 12526 Score = 113 bits (124), Expect = 4e-19 Identities = 197/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 |||||| |||| || || || ||| | || || | ||| ||| | ||||| || ||||| Sbjct 13152 GATGTTGCTCCGCTTTCCCTCGGTCTGGAGACGGCTGGTGGTGTCATGACGAAGCTTATT 13211 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 || | || || || ||||| || || |||| | || |||| ||| |||| || Sbjct 13212 GAACGCAACACCACCATTCCGACGAAGAAGTCTCAGATCTTCACTACCTATGCAGACAAC 13271 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAAT 552482 || ||| ||| |||||| | ||||| || || | | || || || || || Sbjct 13272 CAGCCTGGTGTGCTGATTCAAGTGTTTGAGGGTGAGCGCGCGATGACGAAGGACAACAAC 13331 Query 552483 CAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATT 552542 | | | || | || || | || || ||||| || || |||||||| || || || || Sbjct 13332 CTAATGGGCAAGTTCCATCTTGACGGCATTCCGCCGGCCCCTCGTGGTGTTCCTCAGATC 13391 Query 552543 GAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 || |||||||||||||| ||||| ||||| || |||| || ||||| Sbjct 13392 GAGGTTACTTTCGATATTGATGCGAATGGTATCATGAACGTAACTGC 13438 >seq207 Length=10688 Score = 100 bits (110), Expect = 2e-15 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 563264 GTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 ||||||| ||||| || || ||||| || ||||| |||| || || || ||| | Sbjct 9979 GTACAAGGTGAAGAGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGCGTCCTGCCATCCT 10038 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | || || || || |||||||| | | ||||||||||| |||||||| ||||| |||| Sbjct 10039 CCAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGGAATTCCCTCTTTGTCTT 10098 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTT 563442 ||||||| ||| || || || || || | | | || || ||||||| ||| Sbjct 10099 GAATTTTGGCTTTCACATTTTCGATCGTGTC-GGAAGGCTCCACATCCAGAGTAATCGTT 10157 Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || | ||||| ||||| |||||||| Sbjct 10158 TTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 10189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027543090031540