Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq29934 168 4e-36 seq9997 109 4e-18 seq207 100 2e-15 >seq29934 Length=32083 Score = 168 bits (186), Expect = 4e-36 Identities = 375/555 (68%), Gaps = 11/555 (2%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||| || ||| | || || || ||| ||| || | ||| ||| |||| | | Sbjct 11979 GCAGTTGGAATCGATCTTGGCACGACGTACTCTTGCGTCGGTGTGTGGAAAAACGATGGC 12038 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| || || || ||||| || || || || || || || ||||| |||| || Sbjct 12039 GTGGAAATCATCGCTAACGACCAGGGCAACAGGACCACCCCCTCTTATGTCGCTTTCACC 12098 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || |||| |||| |||||||||| || || |||| | ||| ||||| | ||| Sbjct 12099 GATACCGAACGTCTTGTTGGAGATGCAGCAAAGAATCAGGTGGCAAGGAATCCGGAAAAT 12158 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 ||| | || |||||||| | | || || | || || |||||| || | ||||| || Sbjct 12159 ACTGTCTTCGATGCTAAGCGCCTCATCGGGAGGAAGTTCGATGATCCCGCAGTCCAGTCC 12218 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGAT---AAATGTTGGTGGTAAACCATATATAGAA 474625 || ||| || ||||| || ||||| | | | || || || ||| ||| Sbjct 12219 GACATGAAGCACTGGCCCTTCGTGGTGAAGGCAGGAGCCGCAGGAAAGCCGCTTATTGAA 12278 Query 474626 GCAATACACGCAGGTGAAACTAA--ACAATTTTCA-CCGGAACAAATTTCTTCAATGGTT 474682 | | || || | | |||| | | || || || || | |||| ||||||| Sbjct 12279 GTTA-ACTATCAAGGGT--CTAAGAAGACGTTCCATCCCGAGGAGGTTTCGGCAATGGTG 12335 Query 474683 TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741 || || ||||| ||| || ||| | | |||| | || || | || || || Sbjct 12336 TTGATGAAGATGAAGGAAATTGCTGAGGCCTTCA-TTGGCAAGGATGTGAAAGAGGCCGT 12394 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 ||||||||||| || || || || ||||| || ||||| || || |||||||| || | Sbjct 12395 TATTACTGTTCCCGCTTACTTCAACGATTCCCAGCGTCAGGCTACAAAAGATGCTGGTAC 12454 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 || || ||||| ||||| | |||||||| || ||||| ||||| || || |||| || Sbjct 12455 GATCGCCGGTCTGAATGTGCTGCGTATTATCAACGAACCCACAGCTGCAGCCATTGCCTA 12514 Query 474862 TGGTCTTGATAAGAA 474876 |||||| |||||||| Sbjct 12515 TGGTCTAGATAAGAA 12529 >seq9997 Length=26252 Score = 109 bits (120), Expect = 4e-18 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||| || ||||||||||| || ||| | ||||| || ||||| || ||||| || | Sbjct 3226 TTACCGTCCCAGCATATTTCAACGATGCGCAACGCCAGGCAACGAAGGATGCAGGCGCCA 3285 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||||||||| || ||| | ||||| || || ||||| || || ||||| ||||||||| Sbjct 3286 TTGCAGGTCTCAACGTTATTCGTATCATCAACGAACCCACTGCGGCCGCTATTGCTTATG 3345 Query 474864 GTCTTGATAAGAA 474876 || | |||||||| Sbjct 3346 GTTTGGATAAGAA 3358 >seq207 Length=10688 Score = 100 bits (110), Expect = 2e-15 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 480562 GTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTT 480621 ||||||| ||||| || || ||||| | || || |||| || || ||| ||| | Sbjct 9979 GTACAAGGTGAAGAGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGCGTCCTGCCATCCT 10038 Query 480622 CAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTT 480681 | || ||||| ||||||||||| | ||| || |||||||| |||||||| || ||||||| Sbjct 10039 CCAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGGAATTCCCTCTTTGTCTT 10098 Query 480682 GAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTT 480741 |||| || ||| ||| ||| || || || | | || || ||||| |||| Sbjct 10099 GAATTTTGGCTTTCACATTTTCGATCGTGTCGGAAGGCTCCACATCCAGAGTAATCGTTT 10158 Query 480742 TACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || | || || ||||| ||||| Sbjct 10159 TGCCCGTCAAGGTTTTCACGAAGATTTG 10186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266757407235608