Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq29934 464 8e-126 seq207 156 6e-33 seq9997 122 1e-22 >seq29934 Length=32083 Score = 464 bits (514), Expect = 8e-126 Identities = 1063/1587 (67%), Gaps = 25/1587 (2%) Strand=Plus/Plus Query 195303 TTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAG 195362 |||| |||||| | || || || ||||| || || ||||| ||| |||| ||| | || | Sbjct 11983 TTGGAATCGATCTTGGCACGACGTACTCTTGCGTCGGTGTGTGGAAAAACGATGGCGTGG 12042 Query 195363 AGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATA 195422 | || ||| | || ||||| || ||| | || || || || || || || || || |||| Sbjct 12043 AAATCATCGCTAACGACCAGGGCAACAGGACCACCCCCTCTTATGTCGCTTTCACCGATA 12102 Query 195423 ATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTG 195482 |||||||| ||||||||||| ||||| |||||| || | ||| || ||||||| Sbjct 12103 CCGAACGTCTTGTTGGAGATGCAGCAAAGAATCAGGTGGCAAGGAATCCGGAAAATACTG 12162 Query 195483 TCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATA 195542 |||| || || ||||| || || || | ||||| ||| |||||| ||| | Sbjct 12163 TCTTCGATGCTAAGCGCCTCATCGGGAGGAAGTTCGATGATCCCGCAGTCCAGTCCGACA 12222 Query 195543 TAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTG 195602 | ||| ||||| | | | || | || | || | ||||| | ||| | ||| Sbjct 12223 TGAAGCACTGGCCCTTCGTGGTGAAGGCAGGAGCCGCAGGAAAGCCGCTTATTGAAGTTA 12282 Query 195603 AATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 | | ||| || ||||| || |||||| || ||||| | ||||||||||| | Sbjct 12283 ACTATCAAGGGTCTAAGAAGACGTTCCATCCCGAGGAGGTTTCGGCAATGGTGTTGATGA 12342 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 |||||||||| | ||| || | ||||| || || ||||||||| || ||| | |||| Sbjct 12343 AGATGAAGGAAATTGCTGAGGCCTTCATTGGCAAGGATGTGAAAGAGGCCGTTATTACTG 12402 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | || |||||||||| ||||| || || ||||| ||||| || |||| | | || || | Sbjct 12403 TTCCCGCTTACTTCAACGATTCCCAGCGTCAGGCTACAAAAGATGCTGGTACGATCGCCG 12462 Query 195783 GTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 |||| || ||| || | |||||||| ||||| ||||| || || ||||| |||||||| Sbjct 12463 GTCTGAA-TGTGCTGCGTATTATCAACGAACCCACAGCTGCAGCCATTGCCTATGGTCTA 12521 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 || ||||| ||| || | || || | || || || | || || ||||| || Sbjct 12522 GATAAGAAGGGCCACGGCGAGATGAACGTTCTCATTTTCGACATGGGAGGCGGTACCTTC 12581 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 ||||| || ||||| | || || | |||||| ||||| || ||||| |||||||||||| Sbjct 12582 GATGTTTCTCTTCTAACCATCGAGGATGGTATCTTCGAGGTGAAGGCCACTGCTGGTGAT 12641 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGT-CTGATGAGTT 196020 || || | || || || ||||| || || || | | | | ||| | | || || Sbjct 12642 ACCCACTTGGGCGGAGAGGATTTTGACAACCGCCTGGT-AGACTTCTGTGTTCAGGATTT 12700 Query 196021 CCGTCGAAAGAAT---AAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAG 196077 | |||||||| | || || | ||| | || ||||| || ||| | Sbjct 12701 CAAGAGAAAGAATCGCAGCAAGGACCCTAGCACAAACAGCCGTGCGCTTCGGCGTCTTCG 12760 Query 196078 GACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAA--CAATGGTTGAG 196135 || || ||||| || ||||| || || || | | || || | | | | || Sbjct 12761 AACACAGTGCGAACGGGCAAAACGCACACTTTC--CAGCAGCACACAGGCGACCATCGAA 12818 Query 196136 ATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAA 196195 ||||| || | ||||| || ||||||| | || || ||||||| | ||||| Sbjct 12819 ATTGACTCTCTCTTTGAAGGTATTGACTATTCCGTTTCTCTTTCCCGTGCGAGATTTGAG 12878 Query 196196 GAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGAC 196255 ||||| | |||| || | || | | | || || || | || | ||| Sbjct 12879 GAGTTGTGCATGGATTATTTCCGCAATTCCCTTGTGCCCGTGGAGAAGGTGC----TGAA 12934 Query 196256 GCAAAG----ATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCG 196311 | | || || |||||| | || | || |||| ||||| || || || || || Sbjct 12935 GGATAGTGGCATTGATAAGCGCAGCGTGCACGAGGTTGTGCTTGTTGGCGGCTCCACTCG 12994 Query 196312 TATTCCGAAGATTCAACAGATGCTTTCTAG--CTTCTTCAATAATAAAGATTTAAACAAA 196369 |||||| ||||| || ||| | | || || |||||||| || || | Sbjct 12995 TATTCCAAAGATCCAGCAGCT--TATCCAGGAATTCTTCAACGGAAAGGAGCCTTGCCGT 13052 Query 196370 ACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCA 196429 | || ||||| || || || || ||||| ||||| || |||||||| ||||| ||| Sbjct 13053 TCCATTAACCCCGACGAGGCCGTGGCTTACGGTGCAGCTGTTCAGGCAGCTATCCTCAAG 13112 Query 196430 GGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTG 196489 ||||| ||| | || ||||| || |||| || |||||||| || | ||||| Sbjct 13113 GGTGTGAACAGCTCGCAGGTGCAAGACCTGTTGCTGCTCGATGTTGCTCCGCTTTCCCTC 13172 Query 196490 GGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCG 196549 ||||| || || || |||||||| ||||| || ||||||| | ||||| || |||||| Sbjct 13173 GGTCTGGAGACGGCTGGTGGTGTCATGACGAAGCTTATTGAACGCAACACCACCATTCCG 13232 Query 196550 ACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAA 196609 || |||||| || |||| | || ||| | || || || || ||||| | |||||| Sbjct 13233 ACGAAGAAGTCTCAGATCTTCACTACCTATGCAGACAACCAGCCTGGTGTGCTGATTCAA 13292 Query 196610 GTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGAT-TT 196668 || | ||| || || ||| | | ||||| ||| | ||| | || | ||| || || Sbjct 13293 GTGTTTGAGGGTGAGCGCGCGATGACGAAGGACAACAACCTAATGGGCAAGTTCCATCTT 13352 Query 196669 GACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGA 196728 ||| || ||||| | || || | |||||||| ||||| | ||| |||||||| || Sbjct 13353 GAC-GGCATTCCGCCGGCCCCTCGTGGTGTTCCTCAGATCGAGGTTACTTTCGATATTGA 13411 Query 196729 CGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGAT 196788 || ||||| || | ||||| || || || ||| | ||||||| || | |||| Sbjct 13412 TGCGAATGGTATCATGAACGTAACTGCCACTGAGAAGAATACTGGCAAGTCCAACCAGAT 13471 Query 196789 TGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGA 196848 | |||||||| |||||||| |||||| || | || || || |||||||| ||| Sbjct 13472 TACCATTACCAACGACAAGGGTCGGCTTAGCCAGAACGAGATCGATCGTATGGTGGCAGA 13531 Query 196849 TGCGGAAAAGTACAGGGAAGAAGACGA 196875 || || || |||| || || ||||| Sbjct 13532 GGCAGAGAAATACAAGGCTGAGGACGA 13558 >seq207 Length=10688 Score = 156 bits (172), Expect = 6e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| ||||||||| | || || ||||| || || || || || ||| | || Sbjct 10189 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACGATTACTCTGGATGTGGAGCCTTCC 10130 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | |||||||| |||||||| || || || ||||| || |||||| Sbjct 10129 GACACGATCGAAAATGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCCCCTGATCAG 10070 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | ||||||||||| || ||||| || ||||| | || || |||| |||||| Sbjct 10069 CAGCGTTTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCAGGACGCTGTCTGACTACAAC 10010 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGT 172070 | || || ||| ||||| |||||||| Sbjct 10009 ATCCAGAAAGAGAGCACTCTTCACCTTGT 9981 >seq9997 Length=26252 Score = 122 bits (134), Expect = 1e-22 Identities = 180/254 (71%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||||||| ||| ||| | |||| || ||||| | || ||||| || Sbjct 3171 AAGATGAAGGAGGTTGCAGAAAGCTATTTGGGAAAGGAGGTGAAGAACGCCGTTGTTACC 3230 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || || |||| ||| | ||||| ||||| || ||||| || | || ||||| Sbjct 3231 GTCCCAGCATATTTCAACGATGCGCAACGCCAGGCAACGAAGGATGCAGGCGCCATTGCA 3290 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 ||||| ||| | || | || ||||| ||||| || ||||| || |||||||||||| || Sbjct 3291 GGTCTCAACGTTATTCGTATCATCAACGAACCCACTGCGGCCGCTATTGCTTATGGTTTG 3350 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 || ||| ||||||||| || | | | | | ||||| || ||||| |||||| Sbjct 3351 GATAAG---AAGGACGAA---AAGACCATCCTCGTATACGATCTTGGCGGTGGCACGTTT 3404 Query 195902 GATGTCTCACTTCT 195915 ||||| || |||| Sbjct 3405 GATGTGTCCGTTCT 3418 Score = 89.7 bits (98), Expect = 7e-13 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 196605 TTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTC 196663 |||| || | || || || ||| ||| || | ||| | ||||| | ||||| | || Sbjct 4450 TTCAGGTGTTCGAGGGCGAGCGC-CCCATGACGAAGAACAACCACTTGCTTGGCAAGTTT 4508 Query 196664 GATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGAT 196723 || | || || || || | ||||| | || || ||||||||| ||||| |||||| Sbjct 4509 GAGCTTACCGGCATACCCCCCGCACCACGTGGCGTGCCACAGATTGATGTTACCTTCGAC 4568 Query 196724 ATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA 196783 | ||| || || ||| | ||||||| || | ||||||| | | ||||| ||| Sbjct 4569 GTCGACAGGAACGGCATTTTGAACGTCAGTGCGGTCGACAAGGGTACGGGCAAGAGTGAG 4628 Query 196784 AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTT 196843 ||||| ||||| ||||||||||| |||| || || || || || || ||| || Sbjct 4629 AAGATCACCATTACTAATGACAAGGGCAGGCTGACTCCTGACGAGATCGAGCGCATGATT 4688 Query 196844 CAAGATGCGGAAAAGT 196859 || || || || |||| Sbjct 4689 CAGGAAGCTGAGAAGT 4704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657589831161120