Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq207 132 4e-26 >seq207 Length=10688 Score = 132 bits (146), Expect = 4e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| ||| ||||| || ||||| || || | | || | ||| || || || Sbjct 9987 TGAAGAGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGCGTCCTGCCATCCTCCAGCTGC 10046 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||||||| | ||||| | |||||||| || ||||| |||||||||||||| |||||| Sbjct 10047 TTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGGAATTCCCTCTTTGTCTTG-AATTTT 10105 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | ||| ||| |||| | ||||| ||| | || || || ||||| || |||||||| || Sbjct 10106 GGCTTTCACATTTTCGATCGTGTCGGAAGGCTCCACATCCAGAGTAATCGTTTTGCCCGT 10165 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| || || || |||||||| Sbjct 10166 CAAGGTTTTCACGAAGATTTGCATTTT 10192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385063584203586