Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq29934 230 2e-54 >seq29934 Length=32083 Score = 230 bits (254), Expect = 2e-54 Identities = 974/1519 (64%), Gaps = 42/1519 (3%) Strand=Plus/Minus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 || ||||| ||||| | ||||| ||| || || |||| |||||| || || | Sbjct 13483 TTGGTAATGGTAATCTGGTTGGACTTGCCAGTATTCTTCTCAGTGGCAGTTACGTTCATG 13424 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 |||||||| ||||| | ||| || || || || || ||||| || || | | || || Sbjct 13423 ATACCATTCGCATCAATATCGAAAGTAACCTCGATCTGAGGAACACCACGAGGGGCCGGC 13364 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTA--TTATTATCTTTAGTGAATTTTCGTT 281558 || || || || | || || | |||| ||| || || || || || | || | Sbjct 13363 GGAATGCCGTCAAGATGGAACTTGCCCA--TTAGGTTGTTGTCCTTCGTCATCGCGCGCT 13306 Query 281559 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 281618 ||||||| || | ||| || || ||| || || |||| ||| || || || | || Sbjct 13305 CACCCTCAAACACTTGAATCAGCACACCAGGCTGGTTGTCTGCATAGGTAGTGAAGA-TC 13247 Query 281619 TG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCA 281677 || || || || ||||| || ||||| | ||||||| || ||||| | ||||||| Sbjct 13246 TGAGACTTCTTCGTCGGAATGGTGGTGTTGCGTTCAATAAGCTTCGTCATGACACCACCA 13187 Query 281678 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTT 281737 || || || | ||| || ||||| |||| ||||| | || | | | ||| | | Sbjct 13186 GCCGTCTCCAGACCGAGGGAAAGCGGAGCAACATCGAGCAGCAACAGGTCTTGCACCTGC 13127 Query 281738 TCATCAGTTTG-ACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 281796 | | ||| ||| || |||||||| |||| ||| ||||| || || || || || Sbjct 13126 G-AGCTGTTCACACCCTTGAGGATAGCTGCCTGAACAGCTGCACCGTAAGCCACGGCCTC 13068 Query 281797 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT 281856 || || |||| | | | || || ||||| || | | ||| || Sbjct 13067 GTCGGGGTTAATGGAACGGCAAGGCTCCTTTCCGTTGAAGAATTCCTGGATAAGCTGCTG 13008 Query 281857 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC-CTGTGATTTAT 281915 | ||| |||||||||| || || ||||| | |||| || ||||| ||| | || || Sbjct 13007 GATCTTTGGAATACGAGTGGAGCCGCCAACAAGCACAACCTCGTGCACGCTGCGCTT-AT 12949 Query 281916 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTC-- 281973 | | |||| | || || || ||||| |||| | | || | || Sbjct 12948 CAATGCCACTATCCTTCAGCACCTTCTCCACGGGCACAAGGGAATTGCGGAAATAATCCA 12889 Query 281974 TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAA 282033 || |||| || || ||| | || | | ||||| || ||| ||||| ||||| || Sbjct 12888 TGCACAAC--TCCTCAAATCTCGCACGGGAAAGAGAAACGGAATAGTCAATACCTTCAAA 12831 Query 282034 CAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 282093 | ||| |||| ||| || || | || || || |||| ||||| || ||||| Sbjct 12830 GAGAGAGTCAATTTCGATGGTCGCCTGTGTGCTGCTGGAAAGTGTGCGTTTTGCCCGTTC 12771 Query 282094 ACATGCTGTCCTTAGTCTTCGTAA-----GGCTTTTGCTGATTGATTCAAATCTGTTTTA 282148 || ||| | || | || | |||| || || | | || ||| | Sbjct 12770 GCACTGTGTTCGAAGACGCCGAAGCGCACGGCTGTTTGTGCTAGGGTCCTTGCTGCG--A 12713 Query 282149 TATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCT 282208 | |||||||||||||| | |||||| | ||| || || || |||||||| || || Sbjct 12712 TTCTTTCTCTTGAAATCCTGAACACAGAAGTCTACCAGGCGGTTGTCAAAATCCTCTCCG 12653 Query 282209 CCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAA 282268 ||||| | |||| || | || || | || | ||| | ||||| || | | | | Sbjct 12652 CCCAAGTGGGTATCACCAGCAGTGGCCTTCACCTCGAAGATACCATCCTCGATGGTTAGA 12593 Query 282269 AGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT 282328 |||| |||||| ||| || || ||||| || ||||| || || ||||| || | | Sbjct 12592 AGAGAAACATCGAAGGTACCGCCTCCCATGTCGAAAATGAGAACGTTCATCTC---GCCG 12536 Query 282329 TGG---TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 ||| || ||||| |||||||| |||| || ||||| || ||||| || ||||| | | Sbjct 12535 TGGCCCTTCTTATCTAGACCATAGGCAATGGCTGCAGCTGTGGGTTCGTTGATAATACGC 12476 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | ||||| ||||| || || | || |||||||| || || || | || |||||||| Sbjct 12475 AGCACATTCAGACCGGCGATCGTACCAGCATCTTTTGTAGCCTGACGCTGGGAATCGTTG 12416 Query 282446 AAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCT 282505 || || || ||||||||||||||||| ||| | || || || ||||| | || || Sbjct 12415 AAGTAAGCGGGAACAGTAATAACGGCCTCTTTCACATCCTTGCCAATGAAGGCCTCAGCA 12356 Query 282506 GTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA--GAATAT-TGCTTG 282562 ||| ||||| || | || | ||||| |||| | || ||| ||| | | ||| Sbjct 12355 ATTTCCTTCATCTTCATCAACACCATTGCCGAAACCTCCTCGGGATGGAACGTCTTCTTA 12296 Query 282563 GATTCATTTTGATATGATACTTCAA-AATATGGTTTATT-----ACCAACATTAATAACT 282616 || | |||||| ||||||| || | ||| | || | || | || Sbjct 12295 GACCC---TTGATAGTTAACTTCAATAAGCGGCTTTCCTGCGGCTCCTGCCTTCACCAC- 12240 Query 282617 TTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 282676 || ||||| | ||||| || || || || | |||| || | || || || Sbjct 12239 --GAAGGGCCAGTGCTTCATGTCGGACTGGACTGCGGGATCATCGAACTTCCTCCCGATG 12182 Query 282677 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCA 282736 | || || ||||| || | |||||| ||||| ||| | |||| || |||||| Sbjct 12181 AGGCGCTTAGCATCGAAGACAGTATTTTCCGGATTCCTTGCCACCTGATTCTTTGCTGCA 12122 Query 282737 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 ||||||| ||| |||| || || || || | ||||| || || || || | || || Sbjct 12121 TCTCCAACAAGACGTTCGGTATCGGTGAAAGCGACATAAGAGGGGGTGGTCCTGTTGCCC 12062 Query 282797 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 282856 || || || || || ||||| || | | |||| ||| ||||| || ||| | || Sbjct 12061 TGGTCGTTAGCGATGATTTCCACGCCATCGTTTTTCCACACACCGACGCAAGAGTACGTC 12002 Query 282857 GTTCCTAAATCAATACCAA 282875 || || | ||| || |||| Sbjct 12001 GTGCCAAGATCGATTCCAA 11983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739003071474996