Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq207 86.0 6e-12 seq30048 82.4 7e-11 >seq207 Length=10688 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991 |||||| || ||||||||||| || || | ||| || ||||| || || | | | Sbjct 9998 CTCTTTCTGGATGTTGTAGTCAGACAGCGTCCTGCCATCCTCCAGCTGCTTGCCAGCAAA 10057 Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTG 132051 || | |||||| ||||| || || || || ||||| || |||||| ||||| | Sbjct 10058 AATCAAACGCTGCTGATCAGGGGGAATTCCCTCTTTGTCTTGAATTTTGGCTTTCACATT 10117 Query 132052 TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAT 132111 ||| | || |||| |||||||| || | || | |||||| || |||| ||||| | Sbjct 10118 TTCGATCGTGTCGGAAGGCTCCACATCCAGAGTAATCGTTTTGCCCGTCAAGGTTTTCAC 10177 Query 132112 GAAAATCTGCAT 132123 ||| || ||||| Sbjct 10178 GAAGATTTGCAT 10189 >seq30048 Length=11763 Score = 82.4 bits (90), Expect = 7e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 147465 AGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGC 147523 ||| || || ||||||||||| ||| || || | | |||||||||| | |||| || Sbjct 11041 AGATGCAAGGTTGCAGACGGCAACCTCGTCAGGACTTG-TGTACTGCACTACTTCGCAGC 10983 Query 147524 ACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGT 147583 | || |||||| | || ||||| || ||||| ||||||||||| || || |||| Sbjct 10982 AGAGATTGCTGGAGCGAATCGTCCCCAAGTTCTGCTGGTTGCTTTTCCGGTTACATGCGT 10923 Query 147584 CTTTGAAGAGCATG 147597 ||||| |||||||| Sbjct 10922 CTTTGTAGAGCATG 10909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476413728064560