Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq30931 95.1 4e-16 seq30898 95.1 4e-16 seq30547 95.1 4e-16 seq11082 95.1 4e-16 seq1873 95.1 4e-16 >seq30931 Length=2532 Score = 95.1 bits (104), Expect = 4e-16 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand=Plus/Plus Query 2775 GTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGC 2834 ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 711 GTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG- 769 Query 2835 TTCAGC 2840 ||||| Sbjct 770 -TCAGC 774 >seq30898 Length=2621 Score = 95.1 bits (104), Expect = 4e-16 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 2775 GTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGC 2834 ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 1872 GTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG- 1814 Query 2835 TTCAGC 2840 ||||| Sbjct 1813 -TCAGC 1809 >seq30547 Length=4185 Score = 95.1 bits (104), Expect = 4e-16 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 2775 GTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGC 2834 ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 2659 GTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG- 2601 Query 2835 TTCAGC 2840 ||||| Sbjct 2600 -TCAGC 2596 >seq11082 Length=1813 Score = 95.1 bits (104), Expect = 4e-16 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand=Plus/Plus Query 2775 GTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGC 2834 ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 888 GTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG- 946 Query 2835 TTCAGC 2840 ||||| Sbjct 947 -TCAGC 951 Score = 93.3 bits (102), Expect = 1e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2775 GTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 1477 GTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 1535 >seq1873 Length=2438 Score = 95.1 bits (104), Expect = 4e-16 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand=Plus/Plus Query 2775 GTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGC 2834 ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 282 GTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG- 340 Query 2835 TTCAGC 2840 ||||| Sbjct 341 -TCAGC 345 Score = 93.3 bits (102), Expect = 1e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2775 GTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 865 GTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15843853975170