Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq21137 104 2e-17 seq26988 102 8e-17 seq12168 96.9 3e-15 seq10424 96.9 3e-15 seq1035 96.9 3e-15 seq643 96.9 3e-15 >seq21137 Length=5465 Score = 104 bits (114), Expect = 2e-17 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 39775 CAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCA 39834 |||||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| Sbjct 2013 CAGGCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCG 1954 Query 39835 ATCCCCGGTGCCCGTA-TTTCTGATAA 39860 |||||||||||||||| |||| || || Sbjct 1953 ATCCCCGGTGCCCGTACTTTCCGAAAA 1927 >seq26988 Length=317 Score = 102 bits (112), Expect = 8e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 39775 CAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCA 39834 |||||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| Sbjct 234 CAGGCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCG 175 Query 39835 ATCCCCGGTGCCCGTATTT 39853 |||||||||||||||| || Sbjct 174 ATCCCCGGTGCCCGTACTT 156 >seq12168 Length=1180 Score = 96.9 bits (106), Expect = 3e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 521 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 462 Query 39838 CCCGGTGCCCGTA 39850 ||||||||||||| Sbjct 461 CCCGGTGCCCGTA 449 >seq10424 Length=3686 Score = 96.9 bits (106), Expect = 3e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 687 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 746 Query 39838 CCCGGTGCCCGTA 39850 ||||||||||||| Sbjct 747 CCCGGTGCCCGTA 759 >seq1035 Length=3860 Score = 96.9 bits (106), Expect = 3e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 2981 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 2922 Query 39838 CCCGGTGCCCGTA 39850 ||||||||||||| Sbjct 2921 CCCGGTGCCCGTA 2909 >seq643 Length=5385 Score = 96.9 bits (106), Expect = 3e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 39775 CAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCA 39834 || ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| Sbjct 2774 CACGCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCG 2715 Query 39835 ATCCCCGGTGCCCGTA 39850 |||||||||||||||| Sbjct 2714 ATCCCCGGTGCCCGTA 2699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 465931672842240