Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq29934 284 4e-71 seq207 140 1e-27 seq9997 95.1 4e-14 seq10070 93.3 1e-13 seq20389 87.8 5e-12 seq25070 86.0 2e-11 >seq29934 Length=32083 Score = 284 bits (314), Expect = 4e-71 Identities = 958/1471 (65%), Gaps = 67/1471 (5%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 ||||||||| | || || || || ||||| || | ||| ||| |||| ||| | || ||| Sbjct 11985 GGAATCGATCTTGGCACGACGTACTCTTGCGTCGGTGTGTGGAAAAACGATGGCGTGGAA 12044 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || || || || ||||| || || || || || || || || ||||| || Sbjct 12045 ATCATCGCTAACGACCAGGGCAACAGGACCACCCCCTCTTATGTCGCTTTCACCGATACC 12104 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 || ||| | |||| ||| | ||||| ||||| | || ||||| ||||||| || Sbjct 12105 GAACGTCTTGTTGGAGATGCAGCAAAGAATCAGGTGGCAAGGAATCCGGAAAATACTGTC 12164 Query 349385 TTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CAATCTGA 349440 || ||||||||||| || || || || ||||| || | | || || || || Sbjct 12165 TTCGATGCTAAGCGCCTCATCGGGAGGAAGTTC----GATGATCCCGCAGTCCAGTCCGA 12220 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGT 349500 | || || | || || || || || || | || || ||||||| || Sbjct 12221 CATGAAGCACTGGCCCTTCGTGGTGAAGGCAGGAGCCGCAGGAAAGCCGCTTATTGAAGT 12280 Query 349501 TGAATATAAAGGTGAACAAAAACAATTTTTA-CCCGAAGAAATTTCATCAATGGTTTTAG 349559 | | ||| |||| | || || | || | ||||| || |||| ||||||| || Sbjct 12281 TAACTATCAAGG-GTCTAAGAAGACGTTCCATCCCGAGGAGGTTTCGGCAATGGTGTTGA 12339 Query 349560 TTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTA 349619 | || ||||||||||||||||| || | | || | || | || || ||||||| Sbjct 12340 TGAAGATGAAGGAAATTGCTGAGGCCTTCATTGGCAAGGATGTGAAAGAGGCCGTTATTA 12399 Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679 |||| || || || || || ||| |||||||| || |||||||||||||| | || | Sbjct 12400 CTGTTCCCGCTTACTTCAACGATTCCCAGCGTCAGGCTACAAAAGATGCTGGTACGATCG 12459 Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739 | || | ||||| || | || || || |||||||| |||||||| ||||| ||||| | Sbjct 12460 CCGGTCTGAATGTGCTGCGTATTATCAACGAACCCACAGCTGCAGCCATTGCCTATGGTC 12519 Query 349740 TTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799 | ||||| | | | || || | || |||| ||||| || | || || ||||| | Sbjct 12520 TAGATAAGAAGGGCCACGGCGAGATGAACGTTCTCATTTTCGACATGGGAGGCGGTACCT 12579 Query 349800 TTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859 | ||||| || || ||||| | || || || || || || || || || |||||||||| Sbjct 12580 TCGATGTTTCTCTTCTAACCATCGAGGATGGTATCTTCGAGGTGAAGGCCACTGCTGGTG 12639 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGT-TAAAGAA 349918 |||| || | || ||||| |||||||| || || || | | | || ||| | || | Sbjct 12640 ATACCCACTTGGGCGGAGAGGATTTTGACAACCGCCTGG--TAGACTTCTGTGTTCAGGA 12697 Query 349919 TTTAAGCGTCAAGCTAAAATTGATATTGGAG--ATAATCCTAGAGCAA------------ 349964 || ||||| ||| || || | || | | ||||| ||| Sbjct 12698 TT------TCAAGAGAAA---GA-ATCGCAGCAAGGACCCTAGCACAAACAGCCGTGCGC 12747 Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTC-CTTATCATCTACTACCCAA 350023 | || || || |||| ||| ||||| || || || | ||| || | | || || Sbjct 12748 TTCGGCGTCTTCGAACACAGTGCGAACGGGCAAAACGCACACTTTCCAGC-AGCACACAG 12806 Query 350024 ACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGA--TTTCTTTTCATCTATTACAC 350081 | | || |||||||| ||||| ||| || | || ||| || ||| || | | Sbjct 12807 GCGACCATCGAAATTGACTCTCTCTTTGAAGGTATTGACTATTCCGTT--TCTCTTTCCC 12864 Query 350082 GTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAA--CAATGGATCCTGTGGA 350139 |||| | ||||| || || || ||||| || || |||| | | | || ||||| Sbjct 12865 GTGCGAGATTTGAGGAGTTGTGCATGGA--TTATTTCCGCAATTCCCTTGTGCCCGTGGA 12922 Query 350140 AAAAGTATTAAAAGAT----GCAAAAATGTCCAAAAATCAGATTG-ATGAAGTAGTTTTA 350194 || || | || ||| ||| || || ||| || | || || || | Sbjct 12923 GAAGGTGCTGAAGGATAGTGGCATTGAT-----AAGCGCAGCGTGCACGAGGTTGTGCTT 12977 Query 350195 GTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATC--TGAGTTTTTTAATG 350252 ||||| || || || ||||||||||| | || ||| | |||| || || || || | Sbjct 12978 GTTGGCGGCTCCACTCGTATTCCAAAGATCCAGCAGCT--TATCCAGGAATTCTTCAACG 13035 Query 350253 GCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTC 350312 | || || |||| | || ||||| || || || || || || || ||||| ||||||| Sbjct 13036 GAAAGGAGCCTTGCCGTTCCATTAACCCCGACGAGGCCGTGGCTTACGGTGCAGCTGTTC 13095 Query 350313 AGGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATG 350372 ||||| |||| | || || || || | | | || || || || || |||| Sbjct 13096 AGGCAGCTATCCTCAAGGGTGTGAACAGCTCGCAGGTGCAAGACCTGTTGCTGCTCGATG 13155 Query 350373 TAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTA 350432 | |||| ||||| || || | || || |||||| || ||||| |||||| Sbjct 13156 TTGCTCCGCTTTCCCTCGGTCTGGAGACGGCTGGTGGTGTCATGACGAAGCTTATTGAAC 13215 Query 350433 GAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGC 350492 | || | || | || || || ||||| || | || |||| | |||||| || |||| Sbjct 13216 GCAACACCACCATTCCGACGAAGAAGTCTCAGATCTTCACTACCTATGCAGACAACCAGC 13275 Query 350493 CAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAA--TAA 350550 | | || |||||||| ||||| ||||| || || || || || || || ||| Sbjct 13276 CTGGTGTGCTGATTCAAGTGTTTGAGGGTGAGCGCGCGATGACGAAGGACAACAACCTAA 13335 Query 350551 ACTTGGAGAATTTAC-CCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTG 350609 ||| || || | || | ||||| || ||| | || ||||||||||| | Sbjct 13336 ---TGGGCAAGTTCCATCTTGACGGCATTCCGCCGGCCCCTCGTGGTGTTCCTCAGATCG 13392 Query 350610 AAGTCTCTTTCGATATTGATTCAAATGGTAT 350640 | || |||||||||||||| | |||||||| Sbjct 13393 AGGTTACTTTCGATATTGATGCGAATGGTAT 13423 >seq207 Length=10688 Score = 140 bits (154), Expect = 1e-27 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 ||||| |||||||| |||||| || || || || ||||| | || | ||||| || Sbjct 9981 ACAAGGTGAAGAGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGCGTCCTGCCATCCTCC 10040 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 || || || |||||||| || | ||| ||||||||||| |||||||| ||||| || ||| Sbjct 10041 AGCTGCTTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGGAATTCCCTCTTTGTCTTGA 10100 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 ||||| ||||| ||||| || |||| || || || || || || || |||| || || Sbjct 10101 ATTTTGGCTTTCACATTTTCGATCGTGTCGGAAGGCTCCACATCCAGAGTAATCGTTTTG 10160 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || | ||||| || || || |||||| Sbjct 10161 CCCGTCAAGGTTTTCACGAAGATTTGCATT 10190 >seq9997 Length=26252 Score = 95.1 bits (104), Expect = 4e-14 Identities = 189/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTT 349590 ||| || ||| | || | |||||| | | || |||||||| |||| ||| ||||| Sbjct 3140 ACCAGAGGAAGTGTCCGCGATGGTTCTTGGAAAGATGAAGGAGGTTGCAGAAAGCTATTT 3199 Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 || | || | | || ||| |||| || ||||| ||||| || ||||| || || Sbjct 3200 GGGAAAGGAGGTGAAGAACGCCGTTGTTACCGTCCCAGCATATTTCAACGATGCGCAACG 3259 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 ||||| || ||||| ||| |||||| || | || ||| | | || || || || Sbjct 3260 CCAGGCAACGAAGGATGCAGGCGCCATTGCAGGTCTCAACGTTATTCGTATCATCAACGA 3319 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTAT 349770 ||||||||| || || ||||| ||||| | ||||| || ||| ||||| | || Sbjct 3320 ACCCACTGCGGCCGCTATTGCTTATGGTTTGGATAA---GAAGGAC---GAAAAGACCAT 3373 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATC 349809 || | | ||| | || ||||| || |||||||| || Sbjct 3374 CCTCGTATACGATCTTGGCGGTGGCACGTTTGATGTGTC 3412 Score = 89.7 bits (98), Expect = 2e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 350173 TCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTT 350232 |||||| |||||| | || | |||||||| ||||| |||||||| || |||| ||| | Sbjct 4015 TCAGATCGATGAAATCGTGCTTGTTGGTGGATCTACGCGTATTCCCAAGATTCAGCAGCT 4074 Query 350233 ACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGT 350292 | || || || || ||||| || || | || || ||||||||||| || Sbjct 4075 GATTAAGGATTTCTTCAACGGCAAGGAGCCCAACCGCGGGATCAACCCAGATGAAGCCGT 4134 Query 350293 TGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGG 350331 ||| || |||||||| ||||||||| |||| | ||||| Sbjct 4135 TGCTTACGGTGCTGCAGTTCAGGCAGGTATTCTGTCTGG 4173 >seq10070 Length=15464 Score = 93.3 bits (102), Expect = 1e-13 Identities = 77/89 (87%), Gaps = 4/89 (4%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CG-AAAGC-CT 423821 |||| ||||||||||||||| ||||||||| ||||||||||| ||| || |||| | Sbjct 11719 AGCACGGATGCCCGAGTGGT-TAAGGGGGCGGACTTAAGATCCCCTGATCGTAAAGATCG 11777 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCATTT 423850 ||||||||| ||||||||||||||||||| Sbjct 11778 CGTGGGTTCGAACCCCACTCCGTGCATTT 11806 >seq20389 Length=12380 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/90 (83%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 423766 GCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTCG 423823 ||| ||||| ||||||||||||||| | |||||| ||| |||| ||| || | | || || Sbjct 1216 GCACGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTGGACGCACGTCCGCG 1275 Query 423824 TGGGTTCAAACCCCACTCCGTGCATTTATT 423853 |||||||||| |||||| ||||||||| || Sbjct 1276 TGGGTTCAAATCCCACTTCGTGCATTTTTT 1305 Score = 86.0 bits (94), Expect = 2e-11 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 423766 GCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTCG 423823 ||| ||||| ||||||||||||||| | |||||| ||| |||| ||| || | | || || Sbjct 532 GCACGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTGGACGCACGTCCGCG 591 Query 423824 TGGGTTCAAACCCCACTCCGTGCATTTATTA 423854 |||||||||| |||||| ||||||| || || Sbjct 592 TGGGTTCAAATCCCACTTCGTGCATATAATA 622 >seq25070 Length=479 Score = 86.0 bits (94), Expect = 2e-11 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTC 423822 |||| ||||| ||||||||||||||| | |||||| ||| |||| ||| || | | || | Sbjct 86 AGCACGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTGGACGCACGTCCGC 27 Query 423823 GTGGGTTCAAACCCCACTCCGTGCAT 423848 ||||||||||| |||||| ||||||| Sbjct 26 GTGGGTTCAAATCCCACTTCGTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514610897026238