Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq30938 93.3 5e-14 seq30048 93.3 5e-14 >seq30938 Length=2519 Score = 93.3 bits (102), Expect = 5e-14 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 20611 CCAGA--ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATC 20668 ||||| |||| ||||| | || | ||||| ||||| || ||||| || || | Sbjct 257 CCAGACGACCTTAAGGAGCTGTATAAAACCGTGTGGGAGATAAAACAGAGAAGTATTGTT 316 Query 20669 GACATGGCGGCCGATCGCGGCGCCTACA-TCGACCAGTCCCAGTCGCTCAATGTCTTCAT 20727 || ||||||| |||||| | ||||| | |||||||| || || ||||| || ||| Sbjct 317 GATATGGCGGTCGATCGAG-CGCCTTTTGTTGACCAGTCTCAATCCCTCAACATCCACAT 375 Query 20728 GGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCT 20787 || || || | || ||||| | | ||||| | |||||||||| |||||| Sbjct 376 GGTCAACCCCTCATTCGCCAAGCTCTCCACTATGCACTTCCACGGCTGGCAGGCGGGGCT 435 Query 20788 CAAGACGGGCATGTACTATCTGCGGACCCGAGCC 20821 |||||| |||||||| || ||||| |||| |||| Sbjct 436 CAAGACTGGCATGTATTACCTGCGTACCCAAGCC 469 >seq30048 Length=11763 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTC 79442 |||||||| ||| || ||||| ||||| | ||| || ||||| ||||| || || | Sbjct 10532 CATGAAGATGTCGGGAATCCAAAGGGCGGGGAAAAGATCGCGTGCGCGCATTTCTTCTTT 10473 Query 79443 GCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 || || || || | || ||||| || | ||||| | ||||||||||| || || Sbjct 10472 TCCGTGATTTTTGCGGATGTCCAGAAATTCAAAAATGTCCGAATGCCACGGCTCGAGGTA 10413 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562 | || || ||||| ||||||||||||||||| | |||||| || | || | || Sbjct 10412 AACCGCCAAGCTTCCCTTCCGCTTGCCGCCGCCCTGATCGACGTAACGCGACGCATCATT 10353 Query 79563 GAAAAC 79568 |||||| Sbjct 10352 GAAAAC 10347 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 79771 GTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCG 79830 || ||| ||||||||||||| ||||| ||||||||||||| ||| | ||||| || ||| Sbjct 9761 GTGCCGCCGTTGAAGAGGGTGGGCGTGGCGTGCGTGAAGAGCTTGAGACTCATAAGCTCG 9702 Query 79831 TACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 || ||||| || | | | |||| ||| ||| |||||| || || ||||||| Sbjct 9701 TAAGTCTCAATGGCCTTCTCCACGTCGCCGCAGTGAATGCCGCAGGCCACTCGCATGA 9644 Score = 82.4 bits (90), Expect = 8e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 19457 TACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGG 19516 |||||| | ||||| |||||||| || ||||| || || | ||||||||||| ||| Sbjct 10368 TACGTCGATCAGGGCGGCGGCAAGCGGAAGGGAAGCTTGGCGGTTTACCTCGAGCCGTGG 10427 Query 19517 CACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGC 19576 || ||||| | | || || || || | ||| || || || | || || |||||| Sbjct 10428 CATTCGGACATTTTTGAATTTCTGGACATCCGCAAAAATCACGGAAAAGAAGAAATGCGC 10487 Query 19577 TGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATG 19621 ||||| || ||| | ||| | |||||||| ||| | |||||| Sbjct 10488 GCACGCGATCTTTTCCCCGCCCTTTGGATTCCCGACATCTTCATG 10532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548297532462240