Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq10131 114 1e-20 seq30048 93.3 5e-14 seq30938 84.2 2e-11 >seq10131 Length=12152 Score = 114 bits (126), Expect = 1e-20 Identities = 203/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| || || || || || ||| | | || ||||||||| Sbjct 11574 GTGAAGATGTAACGGGGTGCGGATGCGTCTTTCCCTCCTTCTTTTCTCGAGCCAAACTGT 11515 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||||||||| ||| ||||||||| ||| || || ||| |||| | || Sbjct 11514 CCAATAGGCTCGAGGAAGTTCAGGTTGTTGCTGCCAACAAACCGCTGTGCCATGCTAACG 11455 Query 152149 ATCGTGCCCTGCAG--ACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 || || ||||| ||| ||| | |||||||| || || ||||||| || | |||| Sbjct 11454 ATTGTTTGTTGCAGTGACT-GCT-CTCCGTGGTGGTAGGCGCTCTGCTCTGCCACATATC 11397 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACA-GGCGTAAATC 152265 | | || |||||| ||||||| || | | | ||||||||||| ||| || ||| | Sbjct 11396 CGGACAGCTGCGCTACCTTCAGCTCGGCCTTGCTGTTCTTCTTGA-ACACAGCAAAAAGC 11338 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315 || |||||||| | |||| | || || |||| |||||||| || || Sbjct 11337 ACTTTGCGCTGCCCTACTTTCCACCCATCAACCAGTTGAGGAATAGATCG 11288 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 117356 CCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCC 117415 || || |||||| | ||||| | || ||||||||||||| ||| ||||| || ||| Sbjct 11523 CCAAACTGTCCAATAGGCTCGAGGAAGTTCAGGTTGTTGCTGCCAACAAACCGCTGTGCC 11464 Query 117416 AAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCC 117475 | | | || || || ||| || | ||| || ||||| || || ||||||| ||| Sbjct 11463 ATGCTAACGATTGTTTGTTGCAGTGACTGCTCTCCGTGGTGGTAGGCGCTCTGCTCTGCC 11404 Query 117476 ACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCA 117535 || || || | |||||| || ||||||| || | | | ||||||||||| ||| Sbjct 11403 ACATATCCGGACAGCTGCGCTACCTTCAGCTCGGCCTTGCTGTTCTTCTTGAACACAGCA 11344 Query 117536 TAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACG 117591 ||| ||| |||||||| | | ||| ||||| ||| ||||| || || || Sbjct 11343 AAAAGCACTTTGCGCTGCCCTACTTTCCACCCATCAACCAGTTGAGGAATAGATCG 11288 >seq30048 Length=11763 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 53513 GTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTC 53572 || ||||| | || | || |||||| | ||||| || || ||||| ||||| || Sbjct 10347 GTTTTCAATGATGCGTCGCGTTACGTCGATCAGGGCGGCGGCAAGCGGAAGGGAAGCTTG 10406 Query 53573 GCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAAT 53632 || | ||||||||||||||||| | |||||| | || ||||| || | || ||| Sbjct 10407 GCGGTTTACCTCGAGCCGTGGCATTCGGACATTTTTGAATTTCTGGACATCCGCAAAAAT 10466 Query 53633 CAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTC 53692 || || | ||||| |||||| || || || || | || || |||||||| ||| || Sbjct 10467 CACGGAAAAGAAGAAATGCGCGCACGCGATCTTTTCCCCGCCCTTTGGATTCCCGACATC 10526 Query 53693 TTCATG 53698 |||||| Sbjct 10527 TTCATG 10532 >seq30938 Length=2519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786 || |||||| | || || ||||||||||| ||||| ||| | |||| ||| Sbjct 266 CTTAAGGAGCTGTATAAAACCGTGTGGGAGATAAAACAGAGAAGTATTGTTGATATGGCG 325 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 | ||||| | | | | |||||||| || || || |||||| ||||| || || Sbjct 326 GTCGATCGAGCGCCTTTTGTTGACCAGTCTCAATCCCTCAACATCCACATGGTCAACCCC 385 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 ||| | |||||| | | | |||||||| |||| ||| || ||| |||||||| || Sbjct 386 TCATTCGCCAAGCTCTCCACTATGCACTTCCACGGCTGGCAGGCGGGGCTCAAGACTGGC 445 Query 55907 ATGTACTATCTGCGGACCC 55925 ||||| || ||||| |||| Sbjct 446 ATGTATTACCTGCGTACCC 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546989274730800