Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq207 140 4e-28 seq30938 111 2e-19 seq10131 109 6e-19 >seq207 Length=10688 Score = 140 bits (154), Expect = 4e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || | || ||||| || |||||||| || || ||| | Sbjct 10190 AATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACGATTACTCTGGATGTGGAGCCTTC 10131 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | |||| |||| || |||||||| ||||| ||||||||||| || || || Sbjct 10130 CGACACGATCGAAAATGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCCCCTGATCA 10071 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | ||||||||||| ||||| || ||||||| | || || | ||||| || Sbjct 10070 GCAGCGTTTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCAGGACGCTGTCTGACTACAA 10011 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| || || ||||||||| || || Sbjct 10010 CATCCAGAAAGAGAGCACTCTTCACCTTGT 9981 >seq30938 Length=2519 Score = 111 bits (122), Expect = 2e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || ||||| || |||||||| |||||||| ||| || |||||||| | |||||||| Sbjct 462 GTACGCAGGTAATACATGCCAGTCTTGAGCCCCGCCTGCCAGCCGTGGAAGTGCATAGTG 403 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 |||||| || | || |||||| ||||| |||||| || || |||||||| | Sbjct 402 GAGAGCTTGGCGAATGAGGGGTTGACCATGTGGATGTTGAGGGATTGAGACTGGTCAACA 343 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGA--ATTTCCCATACTG 80215 |||| | | ||||| ||||||| |||| ||| |||| | || || ||||| || | Sbjct 342 AAAGGCGCTCGATCGACCGCCATATCAACAAT--ACTTCTCTGTTTTATCTCCCACACGG 285 Query 80216 TACGATACACCTTACGAAGCTCCTCTGGAATGTC 80249 | ||||| || ||| || ||||||||||| Sbjct 284 TTTTATACAGCTCCTTAAGGTCGTCTGGAATGTC 251 >seq10131 Length=12152 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 32051 TGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGG 32110 ||||||| ||||||||||| || || ||||||||||| | ||||| |||||||| ||| Sbjct 11376 TGAAGGTAGCGCAGCTGTCCGGATATGTGGCAGAGCAGAGCGCCTACCACCACGGAGAGC 11435 Query 32111 CGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGA 32170 ||| || || || || || | | | || ||| ||||| || || ||||||| Sbjct 11436 AGTCACTGCAACAAACAATCGTTAGCATGGCACAGCGGTTTGTTGGCAGCAACAACCTGA 11495 Query 32171 ACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGC-TGCG 32229 |||| |||||||| |||||||||||| | | | || || || || || | || Sbjct 11496 ACTTCCTCGAGCCTATTGGACAGTTTGGCTCGAGAAAAGAAGGAGGGAAAGACGCATCCG 11555 Query 32230 AGCTCCCGTTACATCTTCACCCGTCTCGCACCTT 32263 | ||||||||||||||||| || ||||||| Sbjct 11556 CAC-CCCGTTACATCTTCACCAAACTAGCACCTT 11588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570074106143520