Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq207 96.9 2e-15 >seq207 Length=10688 Score = 96.9 bits (106), Expect = 2e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || ||||||||||| || || ||||| || || || || || | | || || || || Sbjct 9987 TGAAGAGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGCGTCCTGCCATCCTCCAGCTGC 10046 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || ||||| || |||||||| || || || || | |||||| |||||| ||| ||| Sbjct 10047 TTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGGAATTCCCTCTTTGTCT-TGAATTTT 10105 Query 34624 TGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | ||| || | || ||||| |||||| |||| || |||||||| || || Sbjct 10106 GGCTTTCACATTTTCGATCGTGTCGGAAGGCTCCACATCCAGAGTAATCGTTTTGCCCGT 10165 Query 34683 TAACGTTTTCACAAAAATCTGCATGTT 34709 || |||||||| || || ||||| || Sbjct 10166 CAAGGTTTTCACGAAGATTTGCATTTT 10192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314602459667018