Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_028890.1 Length=162486 Score E Sequences producing significant alignments: (Bits) Value seq222 84.2 2e-11 seq20957 82.4 8e-11 >seq222 Length=10329 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 27081 ATACGCCTTCTTAGCTCAGTTGGTAGAGCGATTGACTTGTAATCAATAGGTCGTGGGTTC 27140 || ||||| |||||| |||||||||| ||| |||| | |||||||| ||||||||||||| Sbjct 2990 ATGCGCCTCCTTAGCACAGTTGGTAGTGCGTTTGATTCGTAATCAAAAGGTCGTGGGTTC 2931 Query 27141 GAATCCTACAG 27151 || ||| |||| Sbjct 2930 GATTCCCACAG 2920 >seq20957 Length=6636 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 27084 CGCCTTCTTAGCTCAGTTGGTAGAGCGATTGACTTGTAATCAATAGGTCGTGGGTTCGAA 27143 ||||| |||||| |||||||||| ||| |||| | |||||||| ||||||||||||||| Sbjct 2940 CGCCTCCTTAGCACAGTTGGTAGTGCGTTTGATTCGTAATCAAAAGGTCGTGGGTTCGAT 2999 Query 27144 TCCTACAG 27151 ||| |||| Sbjct 3000 TCCCACAG 3007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519611822595360