Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq207 82.4 5e-11 >seq207 Length=10688 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/203 (69%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| || |||||||| | || || ||| ||||| | ||||| || Sbjct 10192 AAAATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACGATTACTCTGGATGTGGAGCCT 10133 Query 27847 ACCGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| ||| | ||| || ||| ||||| |||||||| || |||| | Sbjct 10132 TCCGACACGATCGAAAAT--GTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCCCCTG 10075 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || || |||||||| || || || |||| || | | | |||| || | Sbjct 10074 ATCAGCAGCGTTTGATTTTTGCTGGCAAGCAGCTGGAGGATGGCAGGACGCTGTCTGACT 10015 Query 27965 ACAACATCCAAAAAGAGAGCACT 27987 |||||||||| |||||||||||| Sbjct 10014 ACAACATCCAGAAAGAGAGCACT 9992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355718643378342