Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq207 143 6e-29 seq10385 116 9e-21 >seq207 Length=10688 Score = 143 bits (158), Expect = 6e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 |||||||| |||||| ||||| |||| ||||| || | || || || ||||| || Sbjct 9981 ACAAGGTGAAGAGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGCGTCCTGCCATCCTCC 10040 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 |||||||| ||||| || || | || || || || || ||||| || || |||||||| Sbjct 10041 AGCTGCTTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGGAATTCCCTCTTTGTCTTGA 10100 Query 225625 ATCTTTTGCTT-CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683 || ||| |||| |||| |||||| ||||| || | ||||| || | || ||||| || Sbjct 10101 AT-TTTGGCTTTCACATTTTCGATCGTGTCGGAAGGCTCCACATCCAGAGTAATCGTTTT 10159 Query 225684 GCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||| ||||| | ||| | ||||||||| Sbjct 10160 GCCCGTCAAGGTTTTCACGAAGATTTGCATTTT 10192 >seq10385 Length=4182 Score = 116 bits (128), Expect = 9e-21 Identities = 110/139 (79%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 |||||| || ||||||| ||||| ||||| ||| ||||||||||||| ||||||||| Sbjct 4144 TATTTCAAGCTCTGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGC 4085 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | | | |||||| || |||||||||| | |||||| |||| |||||||| || Sbjct 4084 TTGTGAGAGCCCCCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCGTACTACTCAGGCGG 4025 Query 7844 AATA-TTTACGCGTTAGCT 7861 ||| || ||||||||||| Sbjct 4024 GATACTTAACGCGTTAGCT 4006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192024752123324