Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20nieschulzi_20[genbank_20GCA_5F000826945.1_202015-01-21] 33,146 sequences; 62,832,469 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq207 176 9e-39 seq10131 122 2e-22 >seq207 Length=10688 Score = 176 bits (194), Expect = 9e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 282889 GTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCT 282948 |||| || || | ||||| ||||| |||||||||||||||| ||||| | |||||||| Sbjct 9979 GTACAAGGTGAAGAGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGCGTCCTGCCATCCT 10038 Query 282949 CTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTT 283008 | || || || || ||||| |||||||| || || ||| ||||| ||||| ||||||| Sbjct 10039 CCAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGGAATTCCCTCTTTGTCTT 10098 Query 283009 GGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCT 283068 | || || ||||| || | ||||| ||||| |||| || || || ||||| ||||| | Sbjct 10099 GAATTTTGGCTTTCACATTTTCGATCGTGTCGGAAGGCTCCACATCCAGAGTAATCGTTT 10158 Query 283069 TACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 | |||||||| || || ||||| || ||||||||| Sbjct 10159 TGCCCGTCAAGGTTTTCACGAAGATTTGCATTTTC 10193 >seq10131 Length=12152 Score = 122 bits (134), Expect = 2e-22 Identities = 341/521 (65%), Gaps = 2/521 (0%) Strand=Plus/Minus Query 273585 ATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAA 273644 || || ||||| |||||| | | |||| | |||||| || |||||||| || Sbjct 11769 ATGATGTCTTTGGGGTTGAAGTTGGGAATAAAAGAAGACCAGCCCGTGCCAATGCCTTCG 11710 Query 273645 GAACCATTCACCAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCA 273704 |||||| | |||||| | || | | ||| || ||||| | |||||||||||| | Sbjct 11709 CTACCATTGATAAGAATAGTGGGTACGACTGGAACGTAATACTTGGGCTCAATTTTCTGT 11650 Query 273705 CCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTC 273764 || || || || ||||||| || ||||| ||||| | || ||| || || || Sbjct 11649 CCCTCCTCATACAGGTACTCCAGCAAAGGGTCATCTGCCTCTGGGAAGACGAGACGGGTG 11590 Query 273765 TGAGGATTCAGTTTCGTGAAAATGTACCTGGCACTCGCATG-GTCCTTGCCACCTTGCAG 273823 | ||| ||||| ||||| ||||| | || || ||| ||| || || |||| Sbjct 11589 TAAGGTGCTAGTTTGGTGAAGATGTAAC-GGGGTGCGGATGCGTCTTTCCCTCCTTCTTT 11531 Query 273824 CCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATC 273883 ||||| |||||||| || ||| || |||| | ||||||||| || || | Sbjct 11530 TCTCGAGCCAAACTGTCCAATAGGCTCGAGGAAGTTCAGGTTGTTGCTGCCAACAAACCG 11471 Query 273884 CTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTG 273943 ||| ||||| | ||||| || || || || ||| |||||||| |||||||| || Sbjct 11470 CTGTGCCATGCTAACGATTGTTTGTTGCAGTGACTGCTCTCCGTGGTGGTAGGCGCTCTG 11411 Query 273944 TTCGGCGATATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAA 274003 || || | ||| || | ||| || ||||||| ||| | | ||| |||||| Sbjct 11410 CTCTGCCACATATCCGGACAGCTGCGCTACCTTCAGCTCGGCCTTGCTGTTCTTCTTGAA 11351 Query 274004 TGCGGAATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACT 274063 | | | | | ||| || |||||| || |||||||||| | |||||| Sbjct 11350 CACAGCAAAAAGCACTTTGCGCTGCCCTACTTTCCACCCATCAACCAGTTGAGGAATAGA 11291 Query 274064 GCGTTCCAAATCATACCGAGAGAACAAAATCAGTTCCTTGT 274104 ||||| || || |||||||| | |||||||||| Sbjct 11290 TCGTTCATTGTCGTATCGAGAGAATTGCACGAGTTCCTTGT 11250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046294667525484