Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3399 107 2e-18 seq2256 93.3 4e-14 seq16648 82.4 7e-11 >seq3399 Length=84741 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || ||||||||||| ||| | ||| | ||| || Sbjct 39815 ACCAAGTGAAGAGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATCA 39874 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||||||| |||| || |||||||| || ||||| || ||||| ||||| Sbjct 39875 AGCTGCTTTCCAGCGAAGATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGG 39934 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| ||||| | ||| || |||| ||| | ||||| Sbjct 39935 ATCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTATAGTTTTC 39994 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || |||||||||||||| Sbjct 39995 CCCGTCAGTGTCTTCACAAAAATCTGCAT 40023 >seq2256 Length=33050 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | || || ||||| |||||||||||||| || || | ||| || Sbjct 3363 CACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGACAGCGTCCTGCCATCTTC 3422 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || || | || |||||||||||||| ||||| || ||||||||||| Sbjct 3423 CAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCCTCCTTGTCCTG 3482 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | ||| || | ||| || || | ||| | ||| || Sbjct 3483 AATCTTCGCCTTCACATTCTCAATGGTATCTGATGGCTCAACATCTAAGGTGATCGTCTT 3542 Query 118709 GCCGGTCAGAGTTTTTAC---AAAAATCTGCATG 118739 ||| |||||||| || || || ||||||||| Sbjct 3543 GCCAGTCAGAGTCTTCACGAANAAGATCTGCATG 3576 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | ||||||||||| |||||||||||||| || || | ||| || Sbjct 3594 CACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTGCCATCTTC 3653 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| || || || | || |||||||||||||| ||||| || ||||||||||| Sbjct 3654 CAGCTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATACCCTCCTTGTC 3710 >seq16648 Length=236 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| |||| || |||||||| |||||||||||||| || || | || || Sbjct 183 CACCAAATGGAGGGTTGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTGCCGTCTTC 124 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || | |||||||| |||||||| ||||| || |||||||| || Sbjct 123 CAGCTGCTTGCCGGCAAAAATGAGACGTTGCTGATCAGGAGGAATTCCCTCCTTATCCTG 64 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || ||| || | |||| ||| || | ||| || || | ||| | || || Sbjct 63 AATCTTGGCTTTTACGTTCTCGATGGTATCTGATGGCTCAACATCTAAGGTGATGGTCTT 4 Query 118709 GCC 118711 ||| Sbjct 3 GCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433717526548816