Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3399 109 4e-19 seq2256 93.3 3e-14 >seq3399 Length=84741 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || ||||| ||||||||||||||||||||| || | | || || Sbjct 39814 TACCAAGTGAAGAGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCATCATC 39873 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || ||||| ||||| || | ||||| ||||| ||||| | |||||| |||||| Sbjct 39874 AAGCTGCTTTCCAGCGAAGATTAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTG 39933 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| || | | |||| | |||||| || | ||| || || || Sbjct 39934 GATCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACGTCGAGGGTTATAGTTTT 39993 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||||||| ||||||||||| || ||||| || Sbjct 39994 CCCCGTCAGTGTCTTCACAAAAATCTGCATTTT 40026 >seq2256 Length=33050 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| ||||||| | || ||||| || || || || |||||||||||||| || Sbjct 3345 GCCGCCTCTCAGACGTAGCACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCAGA 3404 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| | | || |||| || || ||||| || |||| ||||| || || ||||| Sbjct 3405 CAGCGTCCTGCCATCTTCCAACTGCTTGCCGGCAAAAATCAGACGCTGCTGATCAGGAGG 3464 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||||| ||| || ||| || | | | | | || ||| || Sbjct 3465 AATACCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATGGTATCTGATGGCTCAAC 3524 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC---AAAGATTTGCATG 45337 || | ||| ||||||||||| |||||||||||||| ||||| |||||| Sbjct 3525 ATCTAAGGTGATCGTCTTGCCAGTCAGAGTCTTCACGAANAAGATCTGCATG 3576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394972409828308