Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2256 132 4e-26 seq3399 114 1e-20 >seq2256 Length=33050 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||||||||| ||||| ||||||||| | || ||||| || || || | | Sbjct 3563 TTCGTGAAGACTCTGACTGGCAAGACGATCACCTTAGATGTTGAGCCATCAGATACCATT 3504 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | || || || || ||||||||| || | || || || ||||||||||| Sbjct 3503 GAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAGCAGCGTCTG 3444 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || || || ||||| ||||||||||| | ||| || ||||| |||||||| ||| Sbjct 3443 ATTTTTGCCGGCAAGCAGTTGGAAGATGGCAGGACGCTGTCTGATTACAACATTCAGAAA 3384 Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || |||||| |||| || | ||||| ||||| Sbjct 3383 GAATCAACCCTTCATTTGGTGCTACGTCTGAGAGGCGG 3346 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||| || | || || || ||||||||||| || || || ||||| ||| |||| Sbjct 3711 GGACAAGGAGGGTATTCCTCCTGATCAGCAGCGTCTGATTTTTGCCGGCAAGCAGCTGGA 3652 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | ||| || ||||| |||||||| ||||| || || |||||| |||| || Sbjct 3651 AGATGGCAGGACGCTGTCTGATTACAACATTCAGAAAGAGTCTACCCTTCATTTGGTGCT 3592 >seq3399 Length=84741 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| || ||||| ||||| || ||||| || ||| ||||||| || || Sbjct 40026 AAAATGCAGATTTTTGTGAAGACACTGACGGGGAAAACTATAACCCTCGACGTGGAGCCT 39967 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| | |||||| || || | || |||||| || || | || || ||| Sbjct 39966 TCCGACACTATCGAAAATGTGAAGGCCAAGATCCAGGACAAAGAGGGTATTCCTCCAGAC 39907 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| ||||| |||||||| || ||| | || || | ||| | ||| || Sbjct 39906 CAGCAGCGCCTAATCTTCGCTGGAAAGCAGCTTGATGATGGCAGAACTCTCTCCGACTAC 39847 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 |||||||| || ||| |||||||| ||||| Sbjct 39846 AACATTCAGAAGGAAAGCACTCTTCACTTGGTA 39814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445647447236160