Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20praecox_20[genbank_20GCA_5F000499445.1_202013-11-08] 21,348 sequences; 60,083,328 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2111 145 7e-30 >seq2111 Length=7548 Score = 145 bits (160), Expect = 7e-30 Identities = 264/383 (69%), Gaps = 5/383 (1%) Strand=Plus/Minus Query 36817 GCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAA 36876 |||| || |||||| | ||| ||||| || ||||| || || ||||||||| | |||| Sbjct 7095 GCCGCTTGTGTTCTTAAATAGTACATACCTGTTTTCAGTCCTGCTCTCCATCCATGAAAA 7036 Query 36877 TGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTT 36936 |||||| | | | ||||||||||| |||||| |||| ||| | | ||||| | Sbjct 7035 TGCATAGTAGATAACTTTGCGTATGTGGGATTAATCATATGTATATTTAGCGATTGGGAT 6976 Query 36937 TGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCC 36996 |||||||| | | ||||||| ||||| || | |||||||||||| ||| ||| Sbjct 6975 TGATCTATGTATGGTGCTCTGTCTATCGCCATATCAACAATACATTTTTGTTTTATTTCC 6916 Query 36997 CAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATC---TAAATGTTGAATAGAA 37053 || || |||||||||| | |||||||| | ||| | || || || ||| | | | Sbjct 6915 CATACTGTTTTATATAAATCTTTTATATCTTGTGGGATCTCTCTTATATATTGTACACTA 6856 Query 37054 CCATTATGTAACA-CAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTAG 37112 ||||||| | | ||||||| || ||||| | | |||| | | || | || || Sbjct 6855 CCATTATATGCTATCAATTGTTGTC-TTATGCTCTCACTCCATAAACCTCGATCTAATAA 6797 Query 37113 TTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATA 37172 ||| |||||| |||||||| || || ||| || ||| ||| || | | ||| Sbjct 6796 ATCTTTCAATAAATGTGGATTAACTACGAAAAACTCCCCACTTAACACACGACGACAATA 6737 Query 37173 TATATTGCTAGTATATGGTTCAA 37195 ||||||| || || || |||| Sbjct 6736 TATATTGGATGTGTAAGGCTCAA 6714 Score = 102 bits (112), Expect = 8e-17 Identities = 308/467 (66%), Gaps = 24/467 (5%) Strand=Plus/Minus Query 37429 GCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCG 37488 || ||||| ||||| ||||| || | | |||| | | | |||||| | |||| Sbjct 5102 GCAGCATAGTATATACACTCGAATATATTTTTATTAATTTCTCTTGCTTTGTTTGAATCG 5043 Query 37489 AATGCATAGCCCAATAA-TATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGG 37547 || | | || | || || || ||| |||||||| | || ||||| || || ||||| || Sbjct 5042 AAAGGA-AGACGAAGAAGTAGAAAGACATCAGCTAGTCCTTGAACCCCAATCCCTATCGG 4984 Query 37548 TCTATGTTTCTTATT---AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTAT 37604 ||||||||| ||| | |||||| |||||| ||||| || || |||| || Sbjct 4983 TCTATGTTTTAGATTGCTATATCTAGCTTCTTCTATA---GGATAGTAGTTCCTATCAAT 4927 Query 37605 TATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAA 37664 || ||||||||||| || | | ||| || | | || || | | ||| Sbjct 4926 AATATTATTTAGATTATTGGTAACAACTTTAACAACATGTTTTAATTTATTATAATCAAA 4867 Query 37665 TACGTTATTATTAACAAATTTACTCAACGAA------ATA--GATCCTAGATTACATACA 37716 | ||||| | | | | ||| ||||| ||| ||| |||||||||||||| Sbjct 4866 TGTTTTATTGTGTATA--TCTACAAAACGAGGGAGAGATAATGATGCTAGATTACATACA 4809 Query 37717 GCAACTTCATCTTCGTTAC---TAAATTGTATAATCTCTGTACAGAGATTACTCGATCTA 37773 || | || ||||| || || |||||||||| || ||| | ||| ||||| | Sbjct 4808 GCTA--TC-TCTTCAGGACTTGTATATTGTATAATTTCGCAACATAAATTGCTCGAACGT 4752 Query 37774 ATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATAC 37833 || || | || |||||||| ||| |||| |||| ||| || |||| |||||| Sbjct 4751 ATACACCCAAGATGTTTTTGATTGCTCTTTCTATTGCAAGCATCCTTGTATAACATATAC 4692 Query 37834 GGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACT 37880 || |||||| ||||||||| || | | ||||| ||||||||| Sbjct 4691 GGTGTTCCTGTTTCTATTTGTGCTTGTAAGATAGAAAACCATAAACT 4645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468399774157120